Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O14
         (80 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    25   9.6  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    25   9.6  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    25   9.6  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    25   9.6  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    25   9.6  

>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
            protein 73, isoform b protein.
          Length = 1638

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 11   SCRFGTRVGSVTS 49
            +CRFG RVG+V+S
Sbjct: 1472 TCRFGLRVGTVSS 1484


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
            protein 73, isoform f protein.
          Length = 2140

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 11   SCRFGTRVGSVTS 49
            +CRFG RVG+V+S
Sbjct: 1472 TCRFGLRVGTVSS 1484


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 11   SCRFGTRVGSVTS 49
            +CRFG RVG+V+S
Sbjct: 1472 TCRFGLRVGTVSS 1484


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73B protein.
          Length = 1638

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 11   SCRFGTRVGSVTS 49
            +CRFG RVG+V+S
Sbjct: 1472 TCRFGLRVGTVSS 1484


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 11   SCRFGTRVGSVTS 49
            +CRFG RVG+V+S
Sbjct: 1472 TCRFGLRVGTVSS 1484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,383
Number of Sequences: 27780
Number of extensions: 12574
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 12,740,198
effective HSP length: 8
effective length of database: 12,517,958
effective search space used: 225323244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)