Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O12
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...   112   1e-26
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    86   1e-18
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    83   7e-18
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    81   5e-17
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    77   5e-16
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    73   1e-14
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    27   0.86 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   2.6  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    24   4.6  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    24   6.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   8.1  

>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score =  112 bits (269), Expect = 1e-26
 Identities = 49/82 (59%), Positives = 65/82 (79%)
 Frame = +3

Query: 66  IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
           + GGT K+F+      +  +INIL+CGDP TSKSQ+L++V+ + PR  YTSG+GSSAVGL
Sbjct: 519 LFGGTNKSFHKGASPRYRGDINILMCGDPSTSKSQILKYVHKIAPRGVYTSGKGSSAVGL 578

Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
           TAY+T D DT+QLVL++GALVL
Sbjct: 579 TAYITRDQDTKQLVLESGALVL 600



 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 2   SRAL*RPPVYENLDIQKGVLLHCWRDQEK 88
           SR+L  P +YE  D++KG+LL  +    K
Sbjct: 498 SRSL-APSIYEMDDVKKGLLLQLFGGTNK 525


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 85.8 bits (203), Expect = 1e-18
 Identities = 44/82 (53%), Positives = 56/82 (68%)
 Frame = +3

Query: 66  IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
           ++GGT+KN      TH   +INIL+ GDP T+KSQLLR+V    P A  T+GRGSS VGL
Sbjct: 332 LLGGTEKNLTNG--THIRGDINILMVGDPSTAKSQLLRFVLNTAPLAIATTGRGSSGVGL 389

Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
           TA VT D +T +  L+ GA+VL
Sbjct: 390 TAAVTTDKETGERRLEAGAMVL 411


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 83.4 bits (197), Expect = 7e-18
 Identities = 43/82 (52%), Positives = 54/82 (65%)
 Frame = +3

Query: 66  IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
           +VGG  K      R     +INI L GDPG +KSQLL+++  + PR  YT+GRGSS VGL
Sbjct: 379 LVGGVTKELGDGMRIR--GDINICLTGDPGVAKSQLLKYISKVAPRGVYTTGRGSSGVGL 436

Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
           TA V  DP T ++VL+ GALVL
Sbjct: 437 TAAVMRDPVTDEMVLEGGALVL 458


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 80.6 bits (190), Expect = 5e-17
 Identities = 41/82 (50%), Positives = 54/82 (65%)
 Frame = +3

Query: 66  IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
           + GG  KN N  G+     +IN+LL GDPGT+KSQ L++V     RA + +G+G+SAVGL
Sbjct: 510 LFGGVPKNIN--GKHKIRGDINVLLLGDPGTAKSQFLKYVEKTAHRAVFATGQGASAVGL 567

Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
           TA V  DP T +  L+ GALVL
Sbjct: 568 TASVRKDPITNEWTLEGGALVL 589


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 77.4 bits (182), Expect = 5e-16
 Identities = 37/63 (58%), Positives = 47/63 (74%)
 Frame = +3

Query: 123 EINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGLTAYVTNDPDTRQLVLQTGA 302
           +IN+LL GDPGT+KSQ L++V  L P A YTSG+GSSA GLTA +  D  TR+  L+ GA
Sbjct: 365 DINVLLLGDPGTAKSQFLKFVERLAPIAVYTSGKGSSAAGLTASIQRDSVTREFYLEGGA 424

Query: 303 LVL 311
           +VL
Sbjct: 425 MVL 427


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 72.5 bits (170), Expect = 1e-14
 Identities = 33/63 (52%), Positives = 44/63 (69%)
 Frame = +3

Query: 123 EINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGLTAYVTNDPDTRQLVLQTGA 302
           ++NI + GDP TSKSQ L++V   +PRA YTSG+ SSA GLTA V  D +T    ++ GA
Sbjct: 469 DLNICIVGDPSTSKSQFLKYVCNFLPRAIYTSGKASSAAGLTAAVVKDEETGDFTIEAGA 528

Query: 303 LVL 311
           L+L
Sbjct: 529 LML 531


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 129 NILLCGDPGTSKSQLLRWV 185
           NI++CG PGT K+ L   V
Sbjct: 10  NIIICGTPGTGKTTLAEQV 28


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 43  HSEGRTTTLLAG-PRKTLT-LPEEHISCQRSTYSCAGIQGLVN 165
           H E + + LLA   R+ L  L EE  SC RS+ SC  I  ++N
Sbjct: 421 HDEHQFSELLAFYHRRALNDLVEELGSCPRSSDSCRAILDILN 463


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 250 AVSPTAEDPLPEVYCARGTNP 188
           A SP  + P P +Y  R TNP
Sbjct: 497 ANSPEGDLPQPNIYLTRYTNP 517


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 257 DVSSQPHSGGSSTRGVLCTWD*PVDPPEQLGFTS 156
           D S+  H   S ++GV+  WD   +P  +  F S
Sbjct: 439 DESTAFHLAASGSKGVVRVWDTATNPGVRKAFES 472


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 132  ILLCGDPGTSKSQLL 176
            ++ CG PG+ KS L+
Sbjct: 2516 VIFCGPPGSGKSMLM 2530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,933
Number of Sequences: 5004
Number of extensions: 25031
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)