Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O12
(313 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm (l... 121 9e-29
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 85 1e-17
Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical pr... 84 2e-17
AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm (li... 83 4e-17
Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical pr... 79 5e-16
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 74 2e-14
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 74 2e-14
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 74 2e-14
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 74 2e-14
U41994-10|ABB88207.1| 94|Caenorhabditis elegans Hypothetical p... 29 0.68
AC006617-1|AAF39770.2| 397|Caenorhabditis elegans Hypothetical ... 27 3.6
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 25 8.4
>AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 4 protein.
Length = 823
Score = 121 bits (292), Expect = 9e-29
Identities = 57/82 (69%), Positives = 69/82 (84%)
Frame = +3
Query: 66 IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
+ GGT+K+ +T SEINILLCGDPGTSKSQ+L++VY L+PR+QYTSG+GSSAVGL
Sbjct: 443 LFGGTRKDDETTNKTKLRSEINILLCGDPGTSKSQMLQYVYRLLPRSQYTSGKGSSAVGL 502
Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
TA V+ D DT+QLVLQTGALVL
Sbjct: 503 TASVSRDADTKQLVLQTGALVL 524
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = +3
Query: 93 NAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGLTAYVTNDPD 272
N + +IN+LLCGDPGT+KSQ LR+ + PR+ T+G+G+SAVGLTAYV P
Sbjct: 481 NPGAKHRLRGDINVLLCGDPGTAKSQFLRYAAHIAPRSVLTTGQGASAVGLTAYVQRHPV 540
Query: 273 TRQLVLQTGALVL 311
TR+ L+ GA+VL
Sbjct: 541 TREWTLEAGAMVL 553
>Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical
protein C25D7.6 protein.
Length = 812
Score = 84.2 bits (199), Expect = 2e-17
Identities = 43/82 (52%), Positives = 56/82 (68%)
Frame = +3
Query: 66 IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
++GG +K N R +IN+LL GDP +KSQLLR+V + PRA T+GRGSS VGL
Sbjct: 324 LLGGMEKILNNGSRLR--GDINVLLIGDPSVAKSQLLRYVLRMAPRAITTTGRGSSGVGL 381
Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
TA VT DPD+ + L+ GA+VL
Sbjct: 382 TAAVTTDPDSGERRLEAGAMVL 403
>AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 7 protein.
Length = 730
Score = 83.0 bits (196), Expect = 4e-17
Identities = 44/82 (53%), Positives = 56/82 (68%)
Frame = +3
Query: 66 IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
+VGG N N++ IN+L+ GDPG +KSQLL +V L PR+QYT+GRGSS VGL
Sbjct: 367 LVGG---NDNSSNGMKIRGCINVLMMGDPGVAKSQLLGYVNRLAPRSQYTTGRGSSGVGL 423
Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
TA V DP T ++ L+ GALVL
Sbjct: 424 TAAVMKDPVTGEMSLEGGALVL 445
>Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical
protein R10E4.4 protein.
Length = 759
Score = 79.4 bits (187), Expect = 5e-16
Identities = 41/82 (50%), Positives = 55/82 (67%)
Frame = +3
Query: 66 IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
+ GG +K G T +IN+LL GDPGT+KSQLL++V + P YTSG+GSSA GL
Sbjct: 356 LFGGARKKL-PDGITR-RGDINVLLLGDPGTAKSQLLKFVEQVSPIGVYTSGKGSSAAGL 413
Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
TA V DP +R +++ GA+VL
Sbjct: 414 TASVIRDPQSRSFIMEGGAMVL 435
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 74.1 bits (174), Expect = 2e-14
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = +3
Query: 66 IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
++GG K G T +IN+ L GDP T+KSQ+L+ V PRA YTSG+ SSA GL
Sbjct: 372 LLGGVAKKSRDEG-TSLRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGL 430
Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
TA V D ++ + V++ GAL+L
Sbjct: 431 TAAVVKDEESFEFVIEAGALML 452
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 74.1 bits (174), Expect = 2e-14
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = +3
Query: 66 IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
++GG K G T +IN+ L GDP T+KSQ+L+ V PRA YTSG+ SSA GL
Sbjct: 372 LLGGVAKKSRDEG-TSLRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGL 430
Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
TA V D ++ + V++ GAL+L
Sbjct: 431 TAAVVKDEESFEFVIEAGALML 452
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 74.1 bits (174), Expect = 2e-14
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = +3
Query: 66 IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
++GG K G T +IN+ L GDP T+KSQ+L+ V PRA YTSG+ SSA GL
Sbjct: 78 LLGGVAKKSRDEG-TSLRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGL 136
Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
TA V D ++ + V++ GAL+L
Sbjct: 137 TAAVVKDEESFEFVIEAGALML 158
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 74.1 bits (174), Expect = 2e-14
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = +3
Query: 66 IVGGTKKNFNAAGRTHFMSEINILLCGDPGTSKSQLLRWVYGLVPRAQYTSGRGSSAVGL 245
++GG K G T +IN+ L GDP T+KSQ+L+ V PRA YTSG+ SSA GL
Sbjct: 372 LLGGVAKKSRDEG-TSLRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGL 430
Query: 246 TAYVTNDPDTRQLVLQTGALVL 311
TA V D ++ + V++ GAL+L
Sbjct: 431 TAAVVKDEESFEFVIEAGALML 452
>U41994-10|ABB88207.1| 94|Caenorhabditis elegans Hypothetical
protein F59A6.12 protein.
Length = 94
Score = 29.1 bits (62), Expect = 0.68
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 213 TSGRGSSAVGLTAYVTNDPDTRQLVLQTGA 302
T+G G AVG++ +T DT+ LV++ G+
Sbjct: 23 TNGSGYVAVGISGNLTEQADTKPLVIKKGS 52
>AC006617-1|AAF39770.2| 397|Caenorhabditis elegans Hypothetical
protein C39B5.6 protein.
Length = 397
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 116 EMCSSGSVKVFLGPANNVVVRPSECLSFRIXEGAIAR 6
E C SG VK F N+++ ++C+ E +I R
Sbjct: 359 EKCRSGHVKSFNRLRNSIIDSSNKCIELEDLEASIRR 395
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 301 APVCKTSCLVSGSLVT*AVSPTAEDPLP 218
AP C T+C +S + A +P + +P P
Sbjct: 291 APSCSTACQLSCDSIGAATAPQSTNPTP 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,580,736
Number of Sequences: 27780
Number of extensions: 150309
Number of successful extensions: 338
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -