Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O11
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   1.1  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   1.5  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   1.5  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   2.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   4.5  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   4.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 224  RFLPSGR*MHSANLQE*WPIRNADLEDDEDARSRNQKGTVAATFLNF 84
            + +P    +H+A  Q  WP+RN+  E +E     N   +V + ++ F
Sbjct: 1295 KIIPVALSLHNAEFQGLWPLRNSS-EKEEVCSVFNISKSVCSKYVQF 1340


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 335 RGEMLHV*IHLEL-VFVCFDTGTDVWRRRRD 246
           R   +HV ++  + V+ CF  G  V RRRRD
Sbjct: 4   RSSAVHVAVYSGVEVYECFIKGVSVMRRRRD 34


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 32  LRESAISKAFYEIV--FID*NLKMSLLPFLFDYEIERP 139
           L +S I   + E++  F D NLK  LL  ++ Y  ERP
Sbjct: 5   LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERP 42


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 74  FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 193
           F D  LK  LL  +F+   ERP  + ++   +A++  D+L
Sbjct: 46  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 201 LSARW*KTNTTARGVISPPPPDVGSCIKADKDKFQVNLDVQHFTPEEI 344
           LSA+  +T +T  G   P PP V +C   D D     L +  F P E+
Sbjct: 319 LSAQDKETTSTKPG---PVPPLVLTCCVGDYDLIVEELILAGFNPNEV 363


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 40  ERNQQGVLRNCFHRLKF-KNV 99
           E  + G+L+ CFH L F KN+
Sbjct: 626 EITENGILQKCFHLLPFIKNI 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,072
Number of Sequences: 5004
Number of extensions: 23428
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)