Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O11
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0299 - 2322204-2322734,2324089-2326164 29 0.79
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 28 1.8
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 28 1.8
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492... 27 5.6
02_05_0081 + 25671014-25671200,25672490-25672796,25673508-256736... 27 5.6
12_01_0683 + 5821598-5821916,5822348-5822987,5824250-5824329,582... 26 7.4
05_06_0071 + 25355853-25356095,25356183-25356239,25356848-253570... 26 7.4
04_04_0595 + 26490989-26491184,26492375-26492681,26493226-264933... 26 7.4
04_01_0328 - 4330904-4333129 26 7.4
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 26 9.8
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 26 9.8
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 26 9.8
01_01_0697 - 5389071-5389487,5390301-5390390,5390472-5390536,539... 26 9.8
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 29.5 bits (63), Expect = 0.79
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 219 KTNTTARGVISPPPPDVGSCIKADKDKFQVNLDVQHFTP 335
+T T RG ++P PP+ + KAD NL+V P
Sbjct: 272 QTGVTFRGKLTPVPPNSYNTAKADSSATPANLNVPSSKP 310
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 214 GKKRILPPVASSRRRRQTSVPVSKQTKTSS 303
GKK LPP A++ + P+ K+ KTSS
Sbjct: 586 GKKLELPPRANTSTLGSSETPMEKENKTSS 615
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 196 CIYRPDGKKRILPPVASSRRRRQTSVPVSKQTKTSSR 306
C R +LPP A+ RRRR+ V S++T S R
Sbjct: 20 CRSRAASPAPLLPPPATGRRRRRRLVADSQKTAASLR 56
>04_04_0165 +
23247265-23247472,23248115-23248407,23249182-23249239,
23249302-23250014
Length = 423
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 173 WPIRNADLEDDEDARSRNQKGTVAATFLNFNR 78
W IRNA +E+ + + N KG V ++ +
Sbjct: 337 WAIRNAQVEEADRTKKNNGKGGVKIEIIDITK 368
>02_05_0081 +
25671014-25671200,25672490-25672796,25673508-25673637,
25677283-25677477
Length = 272
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 349 TDISSGVKCCTSKFTWNLSLSALIQEPTSGGGGEMTPRAVVFVFYHR 209
TD G C + ++LS +A + +G GG++ R + V Y R
Sbjct: 119 TDECPGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRR 165
>12_01_0683 +
5821598-5821916,5822348-5822987,5824250-5824329,
5825405-5825750,5826237-5826411,5826479-5826524,
5827179-5827384,5827616-5827696
Length = 630
Score = 26.2 bits (55), Expect = 7.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 275 GTDVWRRRRDDATGGSIRFLPSGR*MHSA-NLQE*WPIRNADLEDDEDAR 129
G+D R DD G ++ LPS R +A +L+E DL+ +E+AR
Sbjct: 5 GSDCRRPASDDHEGTAVASLPSSRKRKAAKDLEE----EEEDLQPEEEAR 50
>05_06_0071 +
25355853-25356095,25356183-25356239,25356848-25357069,
25357143-25357227,25357993-25358083,25358172-25358336,
25358583-25358699,25358773-25358848,25359940-25360102,
25360184-25361064
Length = 699
Score = 26.2 bits (55), Expect = 7.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -3
Query: 262 GGGGEMTPRAVVFVFYHRADRCIQQIFRSDGQSEMLI*KTTRTLDLVIKKER*QRHF 92
GGGGE+ P V H A R + R+D ++ + L LV + E QR+F
Sbjct: 54 GGGGEVPPAGAAAVPPHVACRVVGVELRADAATD----EVYARLALVAEGEMLQRNF 106
>04_04_0595 +
26490989-26491184,26492375-26492681,26493226-26493355,
26493878-26493940,26494702-26494905
Length = 299
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 349 TDISSGVKCCTSKFTWNLSLSALIQEPTSGGGGEMTPRAVVFVFYHR 209
TD G C + ++LS +A + +G GG + R + V Y R
Sbjct: 122 TDECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRR 168
>04_01_0328 - 4330904-4333129
Length = 741
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 269 DVWRRRRDDATGG 231
D WRR RDD TGG
Sbjct: 624 DQWRRGRDDDTGG 636
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 74 FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 193
F D LK LL +++ ERP + ++ +A+T D+L
Sbjct: 149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 188
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 74 FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 193
F D LK LL +++ ERP + ++ +A+T D+L
Sbjct: 126 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 165
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 74 FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 193
F D LK LL +++ ERP + ++ +A+T D+L
Sbjct: 136 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 175
>01_01_0697 -
5389071-5389487,5390301-5390390,5390472-5390536,
5391106-5391176,5391297-5391335,5392938-5393350
Length = 364
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 323 LHV*IHLELVFVCFDTGTDVWRRRRDDATGGS 228
L V +H L++V G WRRRR DA G+
Sbjct: 37 LAVALHSLLLWVFLLVGGGGWRRRRGDAGEGA 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,539,005
Number of Sequences: 37544
Number of extensions: 185056
Number of successful extensions: 616
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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