Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O10
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    84   9e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    84   9e-18
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   1.9  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   1.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   1.9  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   5.9  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    24   7.8  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   7.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    24   7.8  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    24   7.8  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 83.8 bits (198), Expect = 9e-18
 Identities = 43/84 (51%), Positives = 57/84 (67%)
 Frame = +3

Query: 75  KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 254
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 255 RRLGTHIRAKRKREELRNVLTQMR 326
           +RLGT  RAK K EEL +V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 83.8 bits (198), Expect = 9e-18
 Identities = 43/84 (51%), Positives = 57/84 (67%)
 Frame = +3

Query: 75  KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 254
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 255 RRLGTHIRAKRKREELRNVLTQMR 326
           +RLGT  RAK K EEL +V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 232 LSFDTLSNSIALFSYCACPTTS 167
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 159 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRKREELR 305
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+   L+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLK 87


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 171  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELRNVLTQMR 326
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  L  V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 23  RNWSAKRPQNDKDIRWQKGY 82
           +NW    PQ   +  W+KGY
Sbjct: 219 KNWEYPSPQQMYNAMWRKGY 238


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 105 RPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAME 209
           RPA L+ ++T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 144 KFVRDLVREVVGHAQYE-KRAMELLKVSKDKRAL-KFLKRRLGTHIRAKRKREELRNV 311
           K +R L +  V  ++ E  RA++    ++  R   K+  + +   ++ K K EELRN+
Sbjct: 61  KAIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASKNIELKLQKKEKEEELRNL 118


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 220 TLSNSIALFSYCACPTTSRTKSRTNLEC 137
           T+++S  LF+  A   T+ TKS  N+EC
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVEC 877


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 242  KGALIFRYFEQFHCPL--LILCVPNNFTNQI 156
            KG  I   F     PL  LI CVPNNF  ++
Sbjct: 1117 KGWAISIVFGVISIPLGALIRCVPNNFLRKV 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,612
Number of Sequences: 5004
Number of extensions: 26581
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)