Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O10
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018    102   9e-23
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...   102   9e-23
07_03_0078 - 13147741-13148913                                         32   0.20 
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109...    29   1.1  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    29   1.8  
09_01_0024 + 438288-438542,439020-439069,440096-440351                 28   2.4  
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688     28   2.4  
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    28   3.2  
02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862     27   4.3  
07_03_0079 + 13169773-13170861                                         27   5.6  
03_06_0682 - 35516081-35518303                                         27   5.6  
11_02_0038 - 7631462-7634428,7635975-7636250                           27   7.5  
05_01_0113 + 760584-760861,760964-761021,761229-761306                 27   7.5  

>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score =  102 bits (245), Expect = 9e-23
 Identities = 55/108 (50%), Positives = 70/108 (64%)
 Frame = +3

Query: 3   TRPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 182
           ++P+  + +G+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G 
Sbjct: 4   SQPKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGF 53

Query: 183 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 326
           A YEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE+  VL +MR
Sbjct: 54  APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101


>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score =  102 bits (245), Expect = 9e-23
 Identities = 55/107 (51%), Positives = 69/107 (64%)
 Frame = +3

Query: 6   RPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHA 185
           +P+  + +G+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A
Sbjct: 5   QPKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFA 54

Query: 186 QYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 326
            YEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE+  V+ +MR
Sbjct: 55  PYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 112 AGLILMALSVIPFLPADIFVVLWPF 38
           AGL+  AL VIP LP  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>05_01_0162 -
           1095020-1095202,1096114-1096188,1096939-1097039,
           1097467-1097577,1097704-1097807,1098260-1098493,
           1098583-1099304
          Length = 509

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 320 DEEGGRTPSPPRHHSH 367
           DEE   TPSPP HH H
Sbjct: 83  DEEEEATPSPPPHHQH 98


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/71 (22%), Positives = 38/71 (53%)
 Frame = +3

Query: 90  KAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 269
           +A + + A L+ +    S+  ++LV E +G    EK+ +ELL +  +++  ++LK +   
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697

Query: 270 HIRAKRKREEL 302
             R + +  ++
Sbjct: 698 EERLQSQESKV 708


>09_01_0024 + 438288-438542,439020-439069,440096-440351
          Length = 186

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 183 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRN 308
           A++E R  E LK ++++ A K LKR+     + ++KR +  N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163


>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
          Length = 761

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 226 FDTLSNSIALFSYCACPTTSRTKSRTNLECLV*MPFSLAGLILMALSVIPFLPADIFVVL 47
           F   +N++  +S C CP  +R        CL    F+LA  ++  +SV  FLP  ++  L
Sbjct: 326 FGECTNTLGSYS-CMCPRGARGDPSIPQGCLEKDKFTLALKVVTGVSVGVFLPLLMYFCL 384

Query: 46  W 44
           +
Sbjct: 385 Y 385


>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
            31636653-31637541,31639401-31641266
          Length = 1599

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 284  LRADVCAE-ATLQELKGALIFRYFEQFHCPLLILCV 180
            L+ + CA  ATL  L+     R+ E F CP L LC+
Sbjct: 1418 LKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLCL 1453


>02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862
          Length = 220

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 313 STFLSSSRFLFARMCVPRRRFKNLRARLSFDTLSNSIALFSYCACPTT 170
           ST+L+S+  L    CV  RRF +L  + SF  LSN I +    A   T
Sbjct: 152 STYLASTSILHFDSCVSGRRF-HLSLQ-SFKNLSNCIFILKLTAIDVT 197


>07_03_0079 + 13169773-13170861
          Length = 362

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 112 AGLILMALSVIPFLPADIFVVLWP 41
           AGL+  AL  IP LP+ + +V WP
Sbjct: 44  AGLLYFALVGIPALPSILRLVAWP 67


>03_06_0682 - 35516081-35518303
          Length = 740

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 108 PARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 275
           P  +  ++  +  F+++++     +++ EKR  ELL+    ++K           LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383

Query: 276 RAKRKREELRNVL 314
           R K  ++E   +L
Sbjct: 384 RTKTTKKEWEAIL 396


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 228 DKRALKFLKRRLGTHIRAKRKREELRNV 311
           DK+ LKFL  R  TH +     E++ N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818


>05_01_0113 + 760584-760861,760964-761021,761229-761306
          Length = 137

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 36  RKGHKTTKISAGKKGITDKAIKIRPARL 119
           RKGHK  +ISA K+  T + +K  P  L
Sbjct: 81  RKGHKCDRISAEKRANTVELMKKMPQML 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,891,746
Number of Sequences: 37544
Number of extensions: 178352
Number of successful extensions: 509
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)