Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O10
         (406 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               128   9e-30
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   128   9e-30
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   128   9e-30
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   128   9e-30
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   128   9e-30
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    62   9e-10
BC008833-1|AAH08833.1|  425|Homo sapiens coiled-coil domain cont...    29   7.8  
AK000298-1|BAA91065.1|  425|Homo sapiens protein ( Homo sapiens ...    29   7.8  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score =  128 bits (308), Expect = 9e-30
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +3

Query: 12  RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY 191
           R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 326
           E+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MR
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  128 bits (308), Expect = 9e-30
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +3

Query: 12  RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY 191
           R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 326
           E+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MR
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  128 bits (308), Expect = 9e-30
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +3

Query: 12  RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY 191
           R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 326
           E+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MR
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  128 bits (308), Expect = 9e-30
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +3

Query: 12  RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY 191
           R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 326
           E+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MR
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  128 bits (308), Expect = 9e-30
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +3

Query: 12  RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY 191
           R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 192 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 326
           E+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MR
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 61.7 bits (143), Expect = 9e-10
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = +3

Query: 213 LKVSKDKRALKFLKRRLGTHIRAKRKREELRN 308
           LKVSKDKRALKF+K+R+GTHIRAKRKREEL N
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


>BC008833-1|AAH08833.1|  425|Homo sapiens coiled-coil domain
           containing 49 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +3

Query: 66  AGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALK 245
           +G   + D A KIR   L  I+ K      +  REV+ +    K+  ELL++S +K+  K
Sbjct: 122 SGANSLLDMASKIREDPLFIIRKKEE----EKKREVLNNPVKMKKIKELLQMSLEKKEKK 177

Query: 246 FLKRRLGTHIRAKRK 290
             K +   H + K +
Sbjct: 178 KKKEKKKKHKKHKHR 192


>AK000298-1|BAA91065.1|  425|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20291 fis, clone HEP04788. ).
          Length = 425

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +3

Query: 66  AGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALK 245
           +G   + D A KIR   L  I+ K      +  REV+ +    K+  ELL++S +K+  K
Sbjct: 122 SGANSLLDMASKIREDPLFIIRKKEE----EKKREVLNNPVKMKKIKELLQMSLEKKEKK 177

Query: 246 FLKRRLGTHIRAKRK 290
             K +   H + K +
Sbjct: 178 KKKEKKKKHKKHKHR 192


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,680,745
Number of Sequences: 237096
Number of extensions: 950948
Number of successful extensions: 6067
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6062
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)