Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O09
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 0.46
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 28 0.46
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 28 0.46
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 27 0.81
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.4
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 27 1.4
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 1.4
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 26 1.9
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 1.9
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.5
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 25 4.3
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 25 4.3
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 4.3
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 5.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 5.7
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 25 5.7
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 24 7.6
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.6
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 24 7.6
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 24 10.0
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 24 10.0
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 24 10.0
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 24 10.0
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 0.46
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 198 QPEF*SXXXXXXXXXXXLPTPPTDKEEEPLSQESVNENP 314
QPEF P PP + +P S ES N NP
Sbjct: 223 QPEF-QQTTSPIFSSSSTPPPPPPRPSQPTSGESQNTNP 260
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 28.3 bits (60), Expect = 0.46
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 184 NRKKFSPNFRVKLKKRIQKMKSYPHHQRIKR 276
NRKKF P F+ K + M S+P +++++
Sbjct: 423 NRKKFGPRFKRDAKAVEEAMISWPESEKVEK 453
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 28.3 bits (60), Expect = 0.46
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 181 KNRKKFSPNFRVKLKKRIQKMKSYPHHQRIKRKNRSHK 294
++ KKF P++R+ + + ++ QR +RKNR K
Sbjct: 80 ESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKK 117
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 0.81
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 190 KKFSPNFRVKLKKRIQKMKSYPHHQRIKRKNRSHK 294
KKF P++R+ + ++ QR +RKNR K
Sbjct: 83 KKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKK 117
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 1.4
Identities = 16/83 (19%), Positives = 38/83 (45%)
Frame = +1
Query: 64 RLLKLEVVKVTQLRLHQHHS*SWNHQLLKRTNLQKQQP*KNRKKFSPNFRVKLKKRIQKM 243
RL + K + + + Q LKR +KQQ + +K+ + + +K+++K
Sbjct: 619 RLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQ 678
Query: 244 KSYPHHQRIKRKNRSHKKVSMKI 312
+ +++ R+ R ++ +I
Sbjct: 679 QQEADREKMAREQRLREEEEKRI 701
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 282 PLSQESVNENPNATEVKSETEPNNKDTNDWQQRE 383
PLS + + NPN + + SET+ + TND + E
Sbjct: 17 PLSNKIRHVNPNISALPSETDISESLTNDLTKLE 50
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 297 SVNENPNATEVKSETEPNNKDTN 365
SV E +++EV + EP+N+D+N
Sbjct: 31 SVREQESSSEVHANPEPDNQDSN 53
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 1.9
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 264 TDKEEEPLSQESVNENPNATEVKSETEPNNKDTNDWQQ 377
T K E P+ Q+ + + + T+P N + +D+++
Sbjct: 126 TQKSESPIPQQVKRDGTTDAKNEETTKPENNEKDDFEE 163
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 291 QESVNENPNATEVKSETEPNNKDTNDWQQRETE 389
+E V NPN+++ + T NN ++D +TE
Sbjct: 46 REKVESNPNSSDEEDLTSTNNTRSSDNTTSDTE 78
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 2.5
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +3
Query: 138 PVAEENKPAETATVEEPKEVQPEF*SXXXXXXXXXXXLPTPPTD-KEEEPLSQESVNENP 314
PV EE P E +EP +P P P T+ +E PLS E+V+E
Sbjct: 113 PVPEEPLPGEPPLPDEPVPEEP------LPGEPPLPNEPVPETNCHKESPLSDETVSETS 166
Query: 315 NATEVKSETEPN 350
S T N
Sbjct: 167 KNDTSNSPTNEN 178
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +3
Query: 261 PTDKEEEPLSQESVNENPNATEVKSETEP-NNKDTN 365
PT +EE ++ N N + EP NN TN
Sbjct: 198 PTSLKEENTQEDDEKVNGNLANISKRAEPQNNGSTN 233
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 141 LVVPGLAVVLVQPQLCYLHHLQFQ*SAPDPTYFSKRINNT 22
L L+V L LC L +++ PDP ++NT
Sbjct: 231 LATGALSVYLFNEMLCLLARDKYKKPTPDPDLLFSHLSNT 270
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 4.3
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +3
Query: 279 EPLSQESVNENPNATEVKSETEPNNKDTND 368
E + + + E+ +T+ S+ + NN ++ND
Sbjct: 373 EEIKKNGIQEDSQSTDDSSKDDDNNSESND 402
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 261 PTDKEEEPLSQESVNENPNATEVKSETEPN 350
P + +EE S+N N E KSET N
Sbjct: 857 PMEMDEEKSQDISINGNSKKEEPKSETLEN 886
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 264 TDKEEEPLSQESVNENPNAT 323
TD+E L Q +NENP+ T
Sbjct: 1125 TDEESRDLIQRFLNENPDPT 1144
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 5.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 133 NHQLLKRTNLQKQQP*KNRKKFSPNFRVKLKKRIQKMK 246
N + L+ LQK + + RKK S VKL K I + K
Sbjct: 472 NQKRLRLLRLQKLKDSQERKKVSAIRAVKLMKEIVEKK 509
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 24.2 bits (50), Expect = 7.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 202 PNFRVKLKKRIQKMKSYPHHQRIKRKNRSHKKVSMKIQMLLK*NQKRNR 348
P F L R QKM Y ++R+K +N H S + Q LK + R R
Sbjct: 284 PGFWKYLPTR-QKMNVYKRNKRLKFQNYIHIMESDERQSKLKLGRVRAR 331
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 264 TDKEEEPLSQESVNENPNATEVKSETEPNNKD 359
T K E + ++V+ + N++ KS +EP N+D
Sbjct: 763 TTKVEVVAAHDAVSISSNSSTHKSHSEPLNRD 794
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 252 PTPPTDKEEEPLSQESVNENPNATEVKSETEPNNK 356
P+ P +++ E+PN E + E+EP K
Sbjct: 156 PSKPQKEKQGNKQGSKTEESPNVDEDELESEPEEK 190
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 297 SVNENPNATE--VKSETEPNNKDTNDWQQRETE 389
++ E PN + + +TNDWQ R TE
Sbjct: 568 NILEQPNGPSGLLSAGFSQGKTNTNDWQDRATE 600
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 258 PPTDKEEEPLSQESVNENPNATEVKSETEPNNKDTN 365
PP ++P S ++ NEN +A + + P + N
Sbjct: 24 PPEYTNQDPNSDQADNENSDAKAHQPQHSPQHSTEN 59
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 249 LPTPPTDKEEEPLSQESVNENPNATEVKSETEPNNKDTN 365
LPT + +EE S +A + E+ P+N T+
Sbjct: 117 LPTQSSGEEEAKYSHPGAPTATSADSISMESRPSNLSTS 155
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 113 WCSRSCVTFTTSSFSNLHRIRHISQKG 33
+C RSC +FT + ++ + IS+ G
Sbjct: 573 FCDRSCESFTRQFLNAIYLAKPISEVG 599
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,551
Number of Sequences: 5004
Number of extensions: 20228
Number of successful extensions: 134
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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