Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O08
(292 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 27 0.42
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 0.74
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 26 0.97
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 0.97
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 2.2
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 25 3.0
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 24 3.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 24 3.9
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 23 6.9
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 23 6.9
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 23 6.9
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 23 9.1
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 23 9.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 23 9.1
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.5 bits (58), Expect = 0.42
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 106 PQTPNSTVRSVSLYIFND--ILNYTEHYRRLRW 14
P+ P++T + S+Y FN+ +L+Y R LR+
Sbjct: 96 PKKPHTTPKPASIYTFNELVVLDYPHKDRALRY 128
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.6 bits (56), Expect = 0.74
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +3
Query: 153 EPMPGFEMHRLLGIWYVIQKTSTASSCITYNFTRTNEPGKYNLEQ 287
EP+ FE+++L +Y++ + +TA+ T++ + ++E+
Sbjct: 8 EPLVKFELYQLKKCYYIVSENATATIFRILKITQSEDELSISIEE 52
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 26.2 bits (55), Expect = 0.97
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 189 GIWYVIQKTSTASSCITYNFTRTNEPGKYNLEQL 290
GIW +I + S C Y++T ++ Y + L
Sbjct: 118 GIWEIIDRHINLSDCSVYSYTPDSDSDPYGDDAL 151
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.2 bits (55), Expect = 0.97
Identities = 20/69 (28%), Positives = 26/69 (37%)
Frame = +2
Query: 35 FGIV*YIIKNVQTNASNCAVRCLWSRLWAYIPPGSVPRCGTDAGI*NAQVTRHMVRYTED 214
FGI+ + N N C R+W +P VP D N Q+T T
Sbjct: 879 FGIIPKSLSQEMNNDENDGKSCFVLRIWNMLPETGVPILVADI---NPQMTSSSSNETSH 935
Query: 215 FDSIELHNL 241
ELH+L
Sbjct: 936 LIQ-ELHSL 943
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 2.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 118 GIHTTWERAPLWNRCRDLKCTGYSAY 195
GIH T+ R LW C L +S Y
Sbjct: 86 GIHYTYSRERLWGTCVILSTLFWSYY 111
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 3.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 216 STASSCITYNFTRTNEPGKYNLEQ 287
+TA S TY++T TNE K+ +++
Sbjct: 151 ATAESEDTYDYTETNELHKFEIKR 174
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 3.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 160 CRDLKCTGYSAYG 198
C+D K TGY YG
Sbjct: 190 CKDYKLTGYCGYG 202
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.2 bits (50), Expect = 3.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 180 CAFQIPASVPQRGTLPGGMYAHKRLHRHL 94
C + P++ GTL G+ +R+ RH+
Sbjct: 635 CLSEFPSNTFYEGTLQNGVTTSERIARHV 663
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 117 HKRLHRHLTAQLEALVCTFLMIY*TIPNTTVVYG 16
++ + RH + + ++ + L +Y T+ TT VYG
Sbjct: 115 NQHMKRHPHHKRDDVIDSTLTVYETVMYTTAVYG 148
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.4 bits (48), Expect = 6.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 188 E*PVHFKSRHRFHNGARSQVVCMPISGSTD 99
E P+ K R+RF NG+R V S +D
Sbjct: 219 EEPLSSKRRNRFGNGSRRDVDSSKYSHDSD 248
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 23.4 bits (48), Expect = 6.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 268 PGSFVLVKL*VMQLDAVEVFCITYHMPSNL 179
P S+V K V + AVEVF YH+ L
Sbjct: 7 PISYVHGKFLVFDVQAVEVFRKNYHILGTL 36
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 170 KSRHRFHNGARSQ 132
K R RF NG+RSQ
Sbjct: 103 KRRRRFENGSRSQ 115
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 23.0 bits (47), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -3
Query: 182 PVHFKS-----RHRFHNGARSQVVCMPISGS 105
P+H+ S RHRFH RS+ P S
Sbjct: 556 PIHYPSSRVSRRHRFHRALRSRFSRSPKKSS 586
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 23.0 bits (47), Expect = 9.1
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -1
Query: 64 IFNDILNYTEHYRRL 20
++ ++LN++E YRRL
Sbjct: 449 LYAELLNFSEQYRRL 463
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,259
Number of Sequences: 5004
Number of extensions: 24827
Number of successful extensions: 57
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -