Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O08
         (292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0227 - 28523385-28524278                                         32   0.089
01_06_0038 - 25819433-25820344                                         31   0.16 
01_06_1750 + 39651202-39651295,39651815-39651888,39653611-39653892     27   2.5  
01_02_0104 + 11163634-11163691,11163929-11164193,11165041-111651...    27   3.3  
09_04_0347 + 16887182-16888504                                         26   4.4  
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548...    26   5.8  
05_01_0159 - 1079089-1079091,1079312-1079572                           25   7.7  

>05_07_0227 - 28523385-28524278
          Length = 297

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 138 LPGGMYAHKRLHRHLTAQLEALVCTFLMIY*TIPNTTVV 22
           L G +Y H+R H HL  QL+   C  L++    P   +V
Sbjct: 121 LTGTLYGHRRGHVHLAFQLDPRACPALLLELAAPTAALV 159


>01_06_0038 - 25819433-25820344
          Length = 303

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 138 LPGGMYAHKRLHRHLTAQLEALVCTFLMIY*TIPNTTVV 22
           L G +Y H+R H HL  Q++   C  L++    P  ++V
Sbjct: 115 LTGTLYGHRRGHVHLAFQVDPRACPALLLELAAPTASLV 153


>01_06_1750 + 39651202-39651295,39651815-39651888,39653611-39653892
          Length = 149

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 162 ASVPQRGTLPGGMYAHKRLHRHLTAQLEALVCTFLMIY*TIPNTTVVYGG 13
           A   +RG   GG   H   HRH    LE  +   L+I+   P+  + + G
Sbjct: 31  ADCAERGREKGGRSGHPARHRH-RRDLEEAIPAILVIFSLYPSKPIEWRG 79


>01_02_0104 +
           11163634-11163691,11163929-11164193,11165041-11165163,
           11165275-11165311,11165320-11165514,11165673-11165792,
           11165979-11166173
          Length = 330

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 205 ITYHMPSNLCISNPGIGSTTGHAP 134
           + Y   S++C+S PG G  TG++P
Sbjct: 26  VIYFKSSSICVS-PGFGGLTGNSP 48


>09_04_0347 + 16887182-16888504
          Length = 440

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 150 QRGTLPGGMYAHKRLHRHLTAQLEALVCT 64
           +RG LPG      +LH ++  QL A V T
Sbjct: 214 KRGVLPGSTQDIGKLHSYIRGQLSAKVST 242


>02_01_0735 +
           5484398-5484400,5484670-5484773,5485012-5485138,
           5485212-5485306,5485597-5485720,5486523-5486603,
           5487177-5487275,5487416-5487583,5487688-5487775,
           5487860-5487930,5488000-5488068,5488368-5488499,
           5488740-5488946
          Length = 455

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 186 VTCAFQIPASVPQRGTLPGGMYAH 115
           + C+  +PA +P+  +LP  +Y H
Sbjct: 10  IKCSHYVPAFIPENTSLPCVIYCH 33


>05_01_0159 - 1079089-1079091,1079312-1079572
          Length = 87

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 160 IGSTTGHAPRWYVCP*AAP 104
           IG + GH PR   CP A P
Sbjct: 16  IGPSRGHLPRVVTCPRAVP 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,804,622
Number of Sequences: 37544
Number of extensions: 175247
Number of successful extensions: 372
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)