Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O08
         (292 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40061-3|AAO91697.1|  205|Caenorhabditis elegans Claudin-like in...    31   0.10 
U40061-2|AAA81150.1|  222|Caenorhabditis elegans Claudin-like in...    31   0.10 
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    29   0.42 
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    27   2.2  
Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    26   3.9  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    25   6.8  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    25   9.1  

>U40061-3|AAO91697.1|  205|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 3, isoform b protein.
          Length = 205

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -2

Query: 183 TCAFQIPASVPQ-RGTLPG-GMYAHKRLHRHLTAQ-LEALVCTFLMIY*TIPNTTVVYGG 13
           +C F++ +   Q R  + G  MY+ + ++RHL  Q  E  V  FL I   I +T +++G 
Sbjct: 62  SCNFRLSSMFKQLRNFMDGYDMYSERSMYRHLPTQTYEVFVALFLAISCMIASTVLLFG- 120

Query: 12  DPSC 1
            P C
Sbjct: 121 -PFC 123


>U40061-2|AAA81150.1|  222|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 3, isoform a protein.
          Length = 222

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -2

Query: 183 TCAFQIPASVPQ-RGTLPG-GMYAHKRLHRHLTAQ-LEALVCTFLMIY*TIPNTTVVYGG 13
           +C F++ +   Q R  + G  MY+ + ++RHL  Q  E  V  FL I   I +T +++G 
Sbjct: 62  SCNFRLSSMFKQLRNFMDGYDMYSERSMYRHLPTQTYEVFVALFLAISCMIASTVLLFG- 120

Query: 12  DPSC 1
            P C
Sbjct: 121 -PFC 123


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
            R09H10.5 protein.
          Length = 1603

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 225  SSCITYNFTRTNEPGKYNLEQL 290
            ++C T+NF  T++P +YN +Q+
Sbjct: 1130 TTCNTWNFVETHDPREYNFQQI 1151


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 168 FEMHRLLGIWYVIQKTSTASSCITYNFTRTN 260
           F  H LL +W  ++  ++  +C+ Y+ T+T+
Sbjct: 35  FSSHFLLVLWIPLRDHNSIGTCVLYHSTKTS 65


>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 208 CITYHMPSNLCISNPGIGSTTGHAPRWYV 122
           C +Y   +   I+N G  ST  +AP WY+
Sbjct: 401 CESYWWKNLFYINNMGDSSTACYAPSWYL 429


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 114 YGHTYHLGACPVVEPMPGFEMHRLLGIWYVIQKTSTASS 230
           Y + YH     +VE +P      LL   Y+I K  T S+
Sbjct: 56  YTNQYHRNLAMIVEQLPNQYFPSLLARMYMIYKQLTISN 94


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 53  IIKNVQTNASNCAVRCLWSRLWAYIPPGSVPRCGTDA 163
           I+K+ +   +  AV   W ++    PPG V  C   A
Sbjct: 623 IMKHTEIKGAMAAVGLTWEQVKEQAPPGVVAACHNGA 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,490,913
Number of Sequences: 27780
Number of extensions: 150983
Number of successful extensions: 339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)