Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O06
(345 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 194 2e-51
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 194 2e-51
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 194 2e-51
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 103 1e-23
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 101 2e-23
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 54 6e-09
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 47 7e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 38 6e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.001
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.002
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.002
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 0.12
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 0.82
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 1.4
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 1.9
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 3.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 3.3
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 25 4.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 5.8
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 5.8
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 24 5.8
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 7.6
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 24 7.6
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 24 7.6
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 194 bits (474), Expect = 2e-51
Identities = 89/96 (92%), Positives = 92/96 (95%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
DKLKAERERGITIDIALWKFET KY VT+IDAPGHR
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHR 96
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 194 bits (474), Expect = 2e-51
Identities = 89/96 (92%), Positives = 92/96 (95%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
DKLKAERERGITIDIALWKFET KY VT+IDAPGHR
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHR 96
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 194 bits (474), Expect = 2e-51
Identities = 89/96 (92%), Positives = 92/96 (95%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
DKLKAERERGITIDIALWKFET KY VT+IDAPGHR
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHR 96
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 103 bits (246), Expect = 1e-23
Identities = 45/92 (48%), Positives = 65/92 (70%)
Frame = +2
Query: 68 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 247
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 248 AERERGITIDIALWKFETGKYYVTIIDAPGHR 343
ERE+G T+++ FET +++DAPGH+
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHK 327
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 101 bits (243), Expect = 2e-23
Identities = 45/89 (50%), Positives = 62/89 (69%)
Frame = +2
Query: 77 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 256
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 257 ERGITIDIALWKFETGKYYVTIIDAPGHR 343
RG+T+D+A FE+ K I DAPGHR
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHR 266
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 54.0 bits (124), Expect = 6e-09
Identities = 34/93 (36%), Positives = 47/93 (50%)
Frame = +2
Query: 62 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 241
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 242 LKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
E+ RGITI A ++ET + +D PGH
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGH 126
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 47.2 bits (107), Expect = 7e-07
Identities = 30/87 (34%), Positives = 43/87 (49%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 260 RGITIDIALWKFETGKYYVTIIDAPGH 340
RGITI+ A F + +ID PGH
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGH 103
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 37.5 bits (83), Expect = 6e-04
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 260 RGITIDI----ALWKFETGKYYVTIIDAPGH 340
RGIT+ ++ + Y + +ID PGH
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGH 134
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 36.3 bits (80), Expect = 0.001
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 260 RGITIDIA 283
+GITI A
Sbjct: 111 KGITIQSA 118
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.002
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 226
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 227 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
+ L AE D+ + + V +ID+PGH
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGH 108
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.002
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 226
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 227 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
+ L AE D+ + + V +ID+PGH
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGH 108
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect(2) = 0.12
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 203 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETGKYYVTIIDAPGH 340
GK + A+ + + GIT I + F+ G ++T +D PGH
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGH 230
Score = 22.2 bits (45), Expect(2) = 0.12
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 83 IVVIGHVDSGKST 121
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 0.82
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 267 IPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMVRLSIPPH 145
IP+ A S+ N++ + ++ LP + S V+L +P H
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 147 AVVSTNVPSKSSRRKPRKWVRVPS 218
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 1.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 297 SNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMV 166
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 3.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 50 PKMGKEKVHINIVVIGHVDSGKST 121
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 3.3
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 268 HHRY-CSLEVRNRQILCHHH 324
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.6 bits (51), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 288 QRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSN 178
Q A+S +IP++RSA N LK L S+ + N
Sbjct: 33 QAAVSQLIPQARSAIQTGNALQGLKTLL--SYVPYGN 67
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 83 IVVIGHVDSGKSTTTGHLIYKC 148
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 5.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 86 VVIGHVDSGKSTTTGHLIYKCG 151
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 24.2 bits (50), Expect = 5.8
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKG----SFKYAWVLD 238
N ++ HVD GK+T L+ G I + T+ + E+ +G S +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 239 KLKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
+ E+ + D Y + +ID+PGH
Sbjct: 81 VISQNDEKRVEKD----------YLINLIDSPGH 104
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 7.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 83 IVVIGHVDSGKSTTTGHLIYKCG 151
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 23.8 bits (49), Expect = 7.6
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 330 ASMMVT*YLPVSNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMVRLSIP 151
AS + Y ++ R ++ + P +R + S YL+ PL S S S + +R SIP
Sbjct: 309 ASTALNSYSTPNSVSRKLTNLTPAARRLVARS----YLRSPLHGSSPSASRHTALRTSIP 364
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 7.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 92 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 223
I HV G+ L + GG RTIE E E + KG++ +
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDH 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,317
Number of Sequences: 5004
Number of extensions: 28154
Number of successful extensions: 107
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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