Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O06
(345 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 206 4e-54
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 206 4e-54
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 206 4e-54
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 206 4e-54
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 140 2e-34
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 4e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 4e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 107 2e-24
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 51 3e-07
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 47 4e-06
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 45 2e-05
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 45 2e-05
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 45 2e-05
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 45 2e-05
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 8e-04
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 8e-04
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 35 0.018
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 35 0.018
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 32 0.096
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 32 0.096
Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical pr... 30 0.51
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 0.68
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 0.68
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 0.89
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 0.89
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 2.1
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 28 2.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 3.6
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 27 3.6
AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical ... 27 4.8
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 26 6.3
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 26 6.3
Z71178-4|CAA94877.1| 390|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 26 8.3
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 26 8.3
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 206 bits (502), Expect = 4e-54
Identities = 94/96 (97%), Positives = 95/96 (98%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHR
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHR 96
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 206 bits (502), Expect = 4e-54
Identities = 94/96 (97%), Positives = 95/96 (98%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHR
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHR 96
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 206 bits (502), Expect = 4e-54
Identities = 94/96 (97%), Positives = 95/96 (98%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHR
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHR 96
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 206 bits (502), Expect = 4e-54
Identities = 94/96 (97%), Positives = 95/96 (98%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHR
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHR 96
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 140 bits (339), Expect = 2e-34
Identities = 64/67 (95%), Positives = 65/67 (97%)
Frame = +2
Query: 56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAER 256
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (271), Expect = 4e-26
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = +2
Query: 65 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 244
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 245 KAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
+ ERERG+T+DI FET + ++DAPGH+
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHK 259
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (271), Expect = 4e-26
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = +2
Query: 65 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 244
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 245 KAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
+ ERERG+T+DI FET + ++DAPGH+
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHK 277
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 107 bits (258), Expect = 2e-24
Identities = 47/95 (49%), Positives = 68/95 (71%)
Frame = +2
Query: 59 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 238
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 239 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHR 343
ERE+G T+++ FET K + TI+DAPGH+
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHK 198
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 50.8 bits (116), Expect = 3e-07
Identities = 34/87 (39%), Positives = 44/87 (50%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 260 RGITIDIALWKFETGKYYVTIIDAPGH 340
RGIT+ A + + + +ID PGH
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGH 100
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 46.8 bits (106), Expect = 4e-06
Identities = 29/87 (33%), Positives = 41/87 (47%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 260 RGITIDIALWKFETGKYYVTIIDAPGH 340
RGITI A + + IID PGH
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGH 122
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 44.8 bits (101), Expect = 2e-05
Identities = 29/87 (33%), Positives = 40/87 (45%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 260 RGITIDIALWKFETGKYYVTIIDAPGH 340
RGIT+ Y + +ID PGH
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGH 112
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 44.8 bits (101), Expect = 2e-05
Identities = 33/93 (35%), Positives = 44/93 (47%)
Frame = +2
Query: 62 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 241
++K H+N+ IGHVD GK+T T I K A G KY +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTS------------AITKI--LATSKGAKYRKYE-DIDN 89
Query: 242 LKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
E+ RGITI+ ++ET K + ID PGH
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGH 122
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 44.8 bits (101), Expect = 2e-05
Identities = 33/93 (35%), Positives = 44/93 (47%)
Frame = +2
Query: 62 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 241
++K H+N+ IGHVD GK+T T I K A G KY +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKI--LATSKGAKYRKYE-DIDN 90
Query: 242 LKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
E+ RGITI+ ++ET K + ID PGH
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGH 123
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 44.8 bits (101), Expect = 2e-05
Identities = 33/93 (35%), Positives = 44/93 (47%)
Frame = +2
Query: 62 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 241
++K H+N+ IGHVD GK+T T I K A G KY +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKI--LATSKGAKYRKYE-DIDN 90
Query: 242 LKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
E+ RGITI+ ++ET K + ID PGH
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGH 123
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.1 bits (87), Expect = 8e-04
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +2
Query: 68 KVHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 241
K+++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 242 LKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
K E++RGITI++A +E+ + D PGH
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGH 118
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.1 bits (87), Expect = 8e-04
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +2
Query: 68 KVHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 241
K+++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 242 LKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
K E++RGITI++A +E+ + D PGH
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGH 118
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 34.7 bits (76), Expect = 0.018
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWV 232
N+ VI HVD GKST T L+ K G I K +F K+ QE + + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFE 80
Query: 233 LDKLKAERERG----ITIDIALWKFETGKYYVTIIDAPGH 340
L+K E +G T+++ K + + + +ID+PGH
Sbjct: 81 LEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 34.7 bits (76), Expect = 0.018
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWV 232
N+ VI HVD GKST T L+ K G I K +F K+ QE + + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFE 80
Query: 233 LDKLKAERERG----ITIDIALWKFETGKYYVTIIDAPGH 340
L+K E +G T+++ K + + + +ID+PGH
Sbjct: 81 LEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.096
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 35 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 142
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 32.3 bits (70), Expect = 0.096
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 35 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 142
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical
protein ZK20.1 protein.
Length = 420
Score = 29.9 bits (64), Expect = 0.51
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 334 RCVDDGDIVFAGFELPESNIDGDTTLTLGL 245
R ++DGDIV + F+ P I D T++L L
Sbjct: 260 RFIEDGDIVSSFFDRPSIRIQSDNTVSLRL 289
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 158 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 158 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 29.1 bits (62), Expect = 0.89
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 62 KEKVHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 238
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRM------------AGKLRY---MD 59
Query: 239 KLKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
+ E+ RGIT+ + + +ID+PGH
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGH 93
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 29.1 bits (62), Expect = 0.89
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 62 KEKVHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 238
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRM------------AGKLRY---MD 59
Query: 239 KLKAERERGITIDIALWKFETGKYYVTIIDAPGH 340
+ E+ RGIT+ + + +ID+PGH
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGH 93
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 77 INIVVIGHVDSGKSTTT 127
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 77 INIVVIGHVDSGKSTTT 127
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 2 GTRLSRIYTLIVIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKC 148
G+ R +++R P+ ++ + + + V+G D GKST G L C
Sbjct: 145 GSNSRRTVVEVLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGC 192
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 227 WVLDKLKAERERGITIDIALWKFETGKYYVTII 325
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 227 WVLDKLKAERERGITIDIALWKFETGKYYVTII 325
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 227 WVLDKLKAERERGITIDIALWKFETGKYYVTII 325
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 50 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 208
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 50 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 208
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 50 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 208
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical
protein Y37H2A.6 protein.
Length = 410
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 38 IRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY-KCGGIDKRTIEKFEKEAQEMGK 208
IR+ K+GK K+ + ++ D GKS +L + G D +F+ ++GK
Sbjct: 11 IREAWKLGKNKIFLRACILYEYDQGKSVYESYLSFCDAVGDDFMEYREFDFWYYKLGK 68
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 259
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 108 PASPQQLVT*STNAVVSTNVPSKSS 182
P+SPQQL NA STNV + S
Sbjct: 120 PSSPQQLHLAFANATTSTNVTNAKS 144
>Z71178-4|CAA94877.1| 390|Caenorhabditis elegans Hypothetical
protein B0024.4 protein.
Length = 390
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 132 T*STNAVVSTNVPSKSSRRKPRKWVRVPSNTLGYWT 239
T N V S + S P KWV +P+N + W+
Sbjct: 278 TIGVNVVGSVPANANFSVTYPIKWVTIPTNIIQSWS 313
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 221 YAWVLDKLK---AERERGITIDIALWKFETGKYYVTIIDAPGH 340
Y W+LD + A + R ++ + + + E+GK ++I PGH
Sbjct: 32 YPWLLDFINNRSATQTRNLSANTVVHQAESGKTELSISFLPGH 74
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 221 YAWVLDKLK---AERERGITIDIALWKFETGKYYVTIIDAPGH 340
Y W+LD + A + R ++ + + + E+GK ++I PGH
Sbjct: 78 YPWLLDFINNRSATQTRNLSANTVVHQAESGKTELSISFLPGH 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,250,970
Number of Sequences: 27780
Number of extensions: 158554
Number of successful extensions: 514
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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