Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O04
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 200 3e-52
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 188 1e-48
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 178 1e-45
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.21
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 30 0.48
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 28 2.0
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 28 2.0
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 28 2.6
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 27 4.5
05_01_0570 + 5061600-5062142,5062790-5062972 27 4.5
02_03_0106 + 15292869-15296138 27 4.5
11_06_0643 - 25773250-25773843 27 6.0
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 26 7.9
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 26 7.9
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 26 7.9
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 26 7.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 200 bits (488), Expect = 3e-52
Identities = 87/112 (77%), Positives = 99/112 (88%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEHL 208
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E++
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQ 364
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQ
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQ 112
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 188 bits (458), Expect = 1e-48
Identities = 81/108 (75%), Positives = 94/108 (87%)
Frame = +2
Query: 41 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEHLSSEA 220
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E++SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 221 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQ 364
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQ
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQ 419
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 178 bits (433), Expect = 1e-45
Identities = 77/105 (73%), Positives = 91/105 (86%)
Frame = +2
Query: 50 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEHLSSEALEA 229
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E+++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 230 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQ 364
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQ
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQ 108
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.5 bits (68), Expect = 0.21
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 152 TVDDFPLC-VHLVSDEYEHLSSEALEAGRICCNKYLVKNCG 271
T D P C +HL SD Y + S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 257 RGTCCNRYGLLPAPQNSDARTHQTLSARIVGSHPLS 150
R CC GL P P S R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 71 YSYNIDNISLVGAPLCSPQSD 9
Y Y D I L+G PLC P SD
Sbjct: 168 YLYPYDEIVLLGIPLCVPWSD 188
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 234 RPASSASELRCSYSSDTKCTHSGKSSTVALFLPKSKIRIFGSGTPRQNR 88
R ASS E C S+ CTH S++A +K + F TP ++R
Sbjct: 1016 RTASSQHEGSCLSSTTNLCTHDELHSSIA----SAKAKSFAPATPVEDR 1060
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 347 QRTTTFY*CG*HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQ 213
+ TTT CG HGR ++SS L+++++ G+ +Y + PQ
Sbjct: 134 RETTTTSSCGEHGRILLSSP-SPSLFKANVLGSLAYKYITMGIPQ 177
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 293 SGCGTDLYRSSLRGTCCNR 237
+GCGT++ R ++ G CNR
Sbjct: 97 AGCGTNVSRDAVAGPTCNR 115
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -1
Query: 231 PASSASEL--RCSYSSDTKCTHSGKSSTVALFLPKSKIRIFGSGTPRQNR 88
PASS RC TK T G A+ R+ GS PRQ R
Sbjct: 93 PASSRLNRAPRCRVEEGTKATVDGGEEDSAVEWNGGPTRVHGSARPRQRR 142
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 297 LIRMWN*SLPQFFTRYLLQQIRPASSASELRCSYSSDTKCTHSGKSSTVALFLPKSKI 124
LI W+ + P++ LL + R EL+CS S C GK+ ++ +P+ +I
Sbjct: 1008 LIIFWSIAFPRWLE--LLIRKRDGLCHFELQCSLSLLRSCLDGGKNWSIVQQIPEVRI 1063
>11_06_0643 - 25773250-25773843
Length = 197
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 293 SGCGTDLYRSSLRGTCCNRYG 231
S TD++ +S+ CC RYG
Sbjct: 144 SSSSTDVFLNSVSARCCRRYG 164
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 258 TRYLLQQIRPASSASELRCSYSSDTKCTHSGKSS 157
+R+ ++ P+ EL C ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 207 RCSYSSDTKCTHSGKSSTVALFLPKS 130
R SYSS + C H+ +STVA P S
Sbjct: 74 RSSYSSSSPCPHAFTTSTVAPSHPGS 99
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 59 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRA 151
+C +PYPK VPD ++ GK +A
Sbjct: 395 FCMYEPYPKGSLEDDVPDTTVQDMLCGKAKA 425
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 284 GTDLYRSSLRGTCCNRYGLLPAPQ 213
G D+ ++L+ C RYGL AP+
Sbjct: 59 GEDVDLNALKSAACRRYGLARAPK 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,338
Number of Sequences: 37544
Number of extensions: 243686
Number of successful extensions: 669
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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