Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N23
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    29   0.25 
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   3.0  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   3.0  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   4.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   4.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    24   7.0  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    24   7.0  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    24   7.0  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    24   9.3  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 29.1 bits (62), Expect = 0.25
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 236 HGLNRLEMYVNDIMSGACLPNNEPNILKENASTAWVD 346
           H LN  + YV ++ +G    N    +  EN +T W+D
Sbjct: 596 HSLNNEQKYVLEVKNGTSEKNPTRIVALENGNTKWMD 632


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 194 AELLIQADKMGHPSHGLNRLEMYVNDIM 277
           AE L+  DK+G  S  L++ E ++ DI+
Sbjct: 240 AECLLAFDKIGSGSGDLSKCESFLGDIL 267


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 112 GCYKRGPEVYDRLPEGCWRGCQGSRTTSGTPYTSRQNGPSKSWTQQT 252
           G + +G +  ++LP       +G+  T+G  Y    NG  K W+  T
Sbjct: 252 GEFTKGLQDIEKLPTYLEDMARGALDTNGPLYDQSCNGSFKVWSDNT 298


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 130 PEVYDRLPEGCWRGCQGSRTTSGTPYTSRQNGPSKS 237
           PE YD   EG           S +P T R+N PS+S
Sbjct: 32  PE-YDSEEEGALPPYSDHARVSNSPNTHRENNPSRS 66


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 43  KSLFCYFLLFLIIRSDSDVFNRQGCYK 123
           KS FC+  L ++ R   D  N   CY+
Sbjct: 74  KSQFCWHALAIVYRETKDYNNSLKCYQ 100


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 244 ESMTWMAHFVCLYKEFRLLFGYLGSRANSLQAIGH 140
           E + +++HFV  YK+  ++  Y  S A+ L+   H
Sbjct: 725 ELVIFLSHFVVNYKKQLMVVAYESSLADILEKKNH 759


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 55  CYFLLFLIIRSDSDVFNRQGCYK 123
           CY L+F ++   +DVFN    +K
Sbjct: 452 CYILVFSLMMLHTDVFNSNNKHK 474


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 130 PEVYDRLPEGCWRGCQGSRTTSGTPYTSRQNGPSKS 237
           PE YD   EG           S +P T R+N PS+S
Sbjct: 32  PE-YDSKEEGALPLYSDHARLSNSPNTHRENNPSRS 66


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 277 HYIVDIHFKSVESM--TWMAHFVCLYKEFRLL 188
           HY   +H  S+E+   ++ AHF+   KEF+LL
Sbjct: 193 HYAEILHL-SLEAHWNSFFAHFIAFGKEFQLL 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,004
Number of Sequences: 5004
Number of extensions: 23046
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)