Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N23
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    28   2.9  
10_01_0088 + 1087807-1088282,1088752-1088974                           27   3.8  
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101...    27   3.8  
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156           26   8.7  
10_02_0118 - 5484301-5484957                                           26   8.7  
09_06_0040 - 20432008-20432091,20432152-20432229,20432322-204329...    26   8.7  
04_03_0454 - 16071490-16071534,16071849-16071980,16072523-160727...    26   8.7  
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    26   8.7  

>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +1

Query: 142 DRLPEGCWRGCQGSRTTS--GTPYTSRQNGPSKSWTQQT*NVCQRYNEWCLSTEQRA*HT 315
           DRL  G WR C GSR  +    P  S     + SW+  T +   R+    L  + R   T
Sbjct: 481 DRL-SGSWRACSGSRAVAAVAAPGCSSSRRTTGSWSPGTGSTSGRHLH--LGADSRGVQT 537

Query: 316 E 318
           E
Sbjct: 538 E 538


>10_01_0088 + 1087807-1088282,1088752-1088974
          Length = 232

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 100 FNRQGCYKRGPEVYDRLPEGCWRGCQGSRTTSG 198
           + R G ++RG     R   GCWRG +G R  SG
Sbjct: 96  YGRGGGWRRGCSGGGRW-RGCWRGRRGCRRGSG 127


>10_01_0078 -
           1012031-1012084,1012998-1013105,1013610-1013661,
           1013926-1016603
          Length = 963

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 205 YTSRQNGPSKSWTQQT*NVCQRYNEWCLSTEQRA*HTERECINGM 339
           YTS  NG   S T+QT NVC+ ++E      Q   H     ING+
Sbjct: 541 YTSLING--YSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGL 583


>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
          Length = 598

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 124 RGPEVYDRLPEGCWRGCQGSRTTSGTPYTS 213
           R P VY  LP+G  R   G+ ++   PY S
Sbjct: 327 RSPCVYQSLPDGELRPVPGANSSRAIPYFS 356


>10_02_0118 - 5484301-5484957
          Length = 218

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 80  SEVTAMSSIGKVATSEALRFMTDCLKAVGAAAKVAEQQAELLIQAD 217
           SE  A SS G  A  +A+  + DC   + AAA +A++ +  L + D
Sbjct: 93  SEEAAASSGGGAARVDAV--LHDCASTISAAANLAKRSSAELTRLD 136


>09_06_0040 -
           20432008-20432091,20432152-20432229,20432322-20432941,
           20433042-20433108,20433276-20433291,20433781-20433887,
           20433989-20434037,20435059-20435142,20435288-20435384,
           20435914-20435985,20436075-20436435,20437864-20438259
          Length = 676

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 173 AKVAEQQAELLIQADKMGHPSHGLNRLEMYVNDIMSGACLPNNEPNIL 316
           A V EQ  E L+  D + +    +  L   VN +   +C+  +EP I+
Sbjct: 428 ASVTEQDTEALLLRDVLINGILAIGTLGHNVNSLCPESCIEQDEPIIM 475


>04_03_0454 -
           16071490-16071534,16071849-16071980,16072523-16072771,
           16075090-16075225,16077833-16078051,16079320-16079698,
           16080238-16080478
          Length = 466

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +2

Query: 86  VTAMSSIGKVATSEALRFMTDCLKAVGAAAKVAEQQAELLIQADKMGHPSHG--LNRLEM 259
           VTA    G   T E+    T    AV A AK+     +  I A K G  + G   N +E 
Sbjct: 366 VTAAVGQGDAVTKESFELTTVRSSAVIACAKIMRFMND--IAAFKSGRKNKGDAANTVEC 423

Query: 260 YVND 271
           Y+N+
Sbjct: 424 YINE 427


>02_01_0509 +
           3694689-3695683,3695799-3695946,3696864-3696943,
           3697214-3698062,3698193-3698337,3698426-3698677,
           3698780-3699089,3699415-3699524
          Length = 962

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 73  LIIRSDSDVFNRQGCYKRGPEVYDRLPEGC 162
           L++ +D ++ +  GC K G   + R P GC
Sbjct: 359 LVLETDVELEDNPGCLKMGRIAHFRDPNGC 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,975,198
Number of Sequences: 37544
Number of extensions: 160187
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)