Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N22
         (106 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    25   1.8  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    23   5.3  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    22   9.3  

>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 28  EWPKRNSVQQPKPDVRLDDSE 90
           +W KRN ++ P+ D+ +  SE
Sbjct: 42  QWAKRNDLENPEDDIIVFSSE 62


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 106 WKILLFPNHLIGHP 65
           W++ L P H IG P
Sbjct: 744 WELCLLPGHRIGEP 757


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 31  WPKRNSVQQPKPDVRLDDSEREE 99
           W KRN + +  PD     + R+E
Sbjct: 119 WKKRNQLGRFNPDFEASKASRQE 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.306    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,439
Number of Sequences: 5004
Number of extensions: 4205
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 16
effective length of database: 2,282,414
effective search space used: 41083452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)