Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N22
         (106 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286...    27   2.0  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    26   3.6  
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907...    25   8.2  

>11_04_0358 +
           16725417-16725422,16725789-16725858,16727825-16728693,
           16729109-16729198,16730071-16730356,16730573-16730592
          Length = 446

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 65  GLGCCTEFRFGHSCPG 18
           G GCCT   FG S PG
Sbjct: 406 GFGCCTNGAFGASSPG 421


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 34  PKRNSVQQPKPDVRLDDS 87
           P R   QQP PD  LDDS
Sbjct: 218 PPRRQRQQPHPDYALDDS 235


>02_03_0190 +
           16188329-16188514,16188552-16188885,16190275-16190745,
           16191055-16191249,16191519-16191643,16192082-16192142,
           16192774-16193023,16193129-16193279,16193594-16193902
          Length = 693

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 4   RGELQPGQEWPKRNSVQQPKPDVRLDDSEREEFS 105
           +G +  GQE   +   +  K D+ +DD +RE+ +
Sbjct: 437 KGLMPDGQEIAVKRLAKGSKQDLNIDDKKREQLA 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.306    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,353
Number of Sequences: 37544
Number of extensions: 29024
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 255467592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)