Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N22
         (106 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    29   0.44 
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U40952-9|AAA81742.1|  253|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    25   5.4  

>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 13  LQPGQEWPKRNSVQQPKPDVRLDDSEREEF 102
           L P + WP   +++ PK +  LD S+  EF
Sbjct: 678 LSPRRVWPADQNIEHPKAETLLDTSDPMEF 707


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 10  ELQPGQEWPKRNSVQQPKPDVR 75
           EL+P Q+W ++  V + K D+R
Sbjct: 709 ELEPLQDWSEKFEVSRKKDDIR 730


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 10  ELQPGQEWPKRNSVQQPKPDVR 75
           EL+P Q+W ++  V + K D+R
Sbjct: 709 ELEPLQDWSEKFEVSRKKDDIR 730


>U40952-9|AAA81742.1|  253|Caenorhabditis elegans Hypothetical
           protein C03B1.4 protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   RGELQPGQEWPKRNSVQQPKPDVRLDDS 87
           +G ++PG   PK   V  P PD++ +D+
Sbjct: 122 KGTVEPGFVVPKNYFVPHPDPDLQPEDA 149


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
           protein.
          Length = 3674

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 10  ELQPGQEWPKRNSVQQPKPDVR 75
           EL+P Q+W ++  V + K D+R
Sbjct: 709 ELEPLQDWSEKFEVSRKKDDIR 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.306    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,871
Number of Sequences: 27780
Number of extensions: 25636
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)