Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N21
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    23   4.2  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    23   5.5  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    23   7.3  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    22   9.7  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    22   9.7  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    22   9.7  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 64  YVLFFRESFSITMLAFIKKYFKRETNKSPETAKCQRSFLLTAF 192
           Y+LFF E+    +L ++  +FK  T     +A     F    F
Sbjct: 164 YLLFFYEASHPDVLEWVHSFFKENTEIRISSATVDAVFNTVVF 206


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 127 KRETNKSPETAKCQRSFL 180
           K +T++SP  + CQRS +
Sbjct: 485 KNDTSQSPSPSFCQRSIM 502


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 58  ENYVLFFRESFSITMLAFIKKYFK 129
           E  +LF  E F ++  + + K+FK
Sbjct: 296 ETNILFLSEFFEVSSTSILAKHFK 319


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 23  FTIDFSIEQDF*KITFCFF 79
           F ID   EQ F  IT+C+F
Sbjct: 197 FPID-GFEQQFFDITYCYF 214


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 67  VLFFRESFSITMLAFIKKYFKRETNKSP 150
           +LF+   FS+T L  I+K F     + P
Sbjct: 27  LLFYLSLFSLTNLFLIQKLFHANHTQHP 54


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 194 IKAVNRKDL*HFAVSGDLFVSLLKYFFIKA 105
           I AV+++   H   SG +FV + + FF+ A
Sbjct: 290 ILAVSKRFYKHTPPSGSIFVRVGQVFFLAA 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,840
Number of Sequences: 5004
Number of extensions: 11429
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)