Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N19
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    44   4e-06
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   0.84 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   1.9  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   3.4  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    24   5.9  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    23   7.9  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    23   7.9  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 44.4 bits (100), Expect = 4e-06
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
 Frame = +2

Query: 23  TSRRVPDNE-PTITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCF 199
           TS  VP+ E P I  V+ + L VM I+KHC  +S  NM    G L+G+ ++  L++++ F
Sbjct: 5   TSLNVPELESPPIERVELESLLVMNIIKHC-RDSFPNMGTI-GQLVGIDIDGVLQVSSSF 62

Query: 200 PFP-----------KHDDTMDEEEYQLEMMRRLRRVSVDHLHVGWY 304
             P           K       + +   M+ RL+ +     HVGWY
Sbjct: 63  ESPSVLENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWY 108


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 266 GAFASSPIGTPLHP-LCHRASERGSNWLSL 180
           G F +S +   L P LCH  ++RG +W +L
Sbjct: 366 GIFLASLVSLFLEPSLCHFQADRGRDWCAL 395


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 14  TRGTSRRVPDNEPTITYVQCD 76
           T  T+R +P N+PT  +  CD
Sbjct: 402 TLTTTRSIPANKPTFFWASCD 422


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 164 VVENRLEITNCFPFPKHD----DTMDEEEYQLEMMRRLRRVSV 280
           + +NRLE  N F FP  D      +   EY   M R+L  ++V
Sbjct: 7   IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV 49


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 248 PIGTPLHPLCHRASERGSNWLSLNDSPQL 162
           P+  P+  LC+ +S+  + W    D+ QL
Sbjct: 187 PVLAPVIDLCNHSSKSNAKWSFSEDAMQL 215


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 260 FASSPIGTPLHPLCHRASERGSNWLSLNDSPQLNPVRHLEPPP 132
           + S+   T  HP   +    GS   S N + QLN     +PPP
Sbjct: 107 YPSASFSTSQHP--SQVYNDGSTLNSNNTTQQLNNNNGFQPPP 147


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 32  RVPDNEPTITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVEN 175
           R PD       ++ + + ++  +  C  E   NME     +L L V+N
Sbjct: 493 RFPDFSTLDIKIKLNLVRLISAIISCGCEEIENMESKMSTILSLAVQN 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,796
Number of Sequences: 5004
Number of extensions: 27738
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)