Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N19
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 87 2e-18
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 29 0.74
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 26 5.2
10_04_0007 + 7439378-7439677,7439873-7440308,7440483-7440593,744... 26 5.2
10_01_0098 - 1193184-1193703,1193814-1193872 26 5.2
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 26 5.2
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 26 5.2
11_01_0331 - 2473724-2474449 26 6.9
05_07_0100 + 27679280-27680320 26 6.9
02_01_0746 + 5554686-5556179 26 6.9
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 25 9.2
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 25 9.2
06_03_0421 - 20600878-20600924,20601275-20601470,20601557-206017... 25 9.2
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 87.4 bits (207), Expect = 2e-18
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Frame = +2
Query: 2 ARGGTRGTSRRVPDNEPTITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRL 181
AR + S + + VQ +GLAV+KI+KHC E + + + G LLGL V + L
Sbjct: 14 ARSFLQAVSTVTEEAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVL 70
Query: 182 EITNCFPFPKHDDT----MDEEEYQLEMMRRLRRVSVDHLHVGWYQ 307
E+TNCFPFP +D D YQLEMMR LR V+VD+ VGWYQ
Sbjct: 71 EVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQ 116
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 29.1 bits (62), Expect = 0.74
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 53 TITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 232
T+ V L ++ IV H + + + G LLG +++TN + P +D D
Sbjct: 13 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72
Query: 233 EEYQLE 250
+ L+
Sbjct: 73 RIWFLD 78
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 213 CFGKGKQLVISKRFSTTKPSKAP*ATSILLHDSSWQCLTIFITA 82
C +SK S T + AP + L SSW LT+ I A
Sbjct: 66 CSASPSHTPVSKPSSATGETAAPQSNLCALRCSSWDFLTLAIAA 109
>10_04_0007 +
7439378-7439677,7439873-7440308,7440483-7440593,
7440633-7440762,7440798-7441512
Length = 563
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 5 RGGTRGTSRRVPDNEPTITYVQ 70
RGGT G S+ P N+ T VQ
Sbjct: 281 RGGTNGISKEAPSNDSTDKEVQ 302
>10_01_0098 - 1193184-1193703,1193814-1193872
Length = 192
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 284 GQH*PCG-AFASSPIGTPLHPLCHRASERGSNWLSLNDSPQLNP 156
G H PC AF++ P+G + L +AS S WL + L+P
Sbjct: 57 GLH-PCRPAFSAQPLGFYIDDLFPKASMSPSRWLWVRKGRGLDP 99
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 151 LTGFSCGESFRDNQLLPLSEAR*HNG-*RGVPIGDDAKAPQGQ 276
+ GFS G S +DN+L L++ NG G + DD + G+
Sbjct: 1081 MNGFSQGNSDKDNELPQLTQGHASNGIISGRSLDDDLQHASGR 1123
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 206 ERGSNWLSLNDSPQLNPVRHLEPPPY 129
+ G N + +P P R+ +PPPY
Sbjct: 975 QSGGNSYQSHSAPSAGPGRYAQPPPY 1000
>11_01_0331 - 2473724-2474449
Length = 241
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 8 GGTRGTSRRVPDNEPTITYVQCDG 79
GG R VP++EPT V C G
Sbjct: 105 GGGRNPKAAVPEHEPTSPKVSCIG 128
>05_07_0100 + 27679280-27680320
Length = 346
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 185 SLNDSPQLNPVRHLEPPPYYCMILHGSA 102
S SP +PV PPPY+ M +H SA
Sbjct: 138 SKRPSPSPSPV---PPPPYFAMPIHPSA 162
>02_01_0746 + 5554686-5556179
Length = 497
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 292 MQMVNTDPAEPSHHLQLVLLFIHCVIVLRKGEAIGYL 182
+Q V DPA +++L+ HCV ++ GE L
Sbjct: 206 VQHVCDDPAVRRRFSRIILVDFHCVSLMAAGETTALL 242
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +2
Query: 5 RGGTRGTSRRVPDNEPTITYVQCDG----LAVMKIVKHC 109
RG G RRV D P Y+ C L V+ + K C
Sbjct: 419 RGEFHGLQRRVLDENPYAFYIHCFAHQLQLVVVSVAKCC 457
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +2
Query: 5 RGGTRGTSRRVPDNEPTITYVQCDG----LAVMKIVKHC 109
RG G RRV D P Y+ C L V+ + K C
Sbjct: 595 RGEFHGLQRRVLDENPYAFYIHCFAHQLQLVVVSVAKCC 633
>06_03_0421 -
20600878-20600924,20601275-20601470,20601557-20601757,
20604573-20604761
Length = 210
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 107 CHEESCSNMEVAQGALLGLVVEN 175
C+ SCS + ALLGL V+N
Sbjct: 188 CYTYSCSKAKQRWAALLGLAVKN 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040,137
Number of Sequences: 37544
Number of extensions: 210036
Number of successful extensions: 512
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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