Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N17
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 96 2e-21
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 57 1e-09
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 55 4e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 54 1e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 3e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 51 7e-08
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 51 7e-08
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 48 8e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 47 1e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 6e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 8e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 43 2e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 43 2e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 3e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 4e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 3e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 7e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 0.001
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.001
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 37 0.002
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.006
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.006
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 34 0.008
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.026
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.045
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.045
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.14
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 29 0.32
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 0.73
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 2.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 3.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 9.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 96.3 bits (229), Expect = 2e-21
Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Frame = +1
Query: 97 NNDNFAQDITTDNQLNGNSEHGGGDGQDNSAE-APGRDDDRKLFVGGLSWETSDKELRDH 273
+ +N D +NQ +DN+ E +P +D K+F+GGL+WET+D LRD+
Sbjct: 123 DGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDY 182
Query: 274 FSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKA 441
F +GE+ V D TGRSRGF F+ FK P +++VM+ EH ++ K +DPK+A
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRA 237
Score = 61.3 bits (142), Expect = 6e-11
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = +1
Query: 133 NQLNGNSEHGGGDGQDNSAEAPGRDDDR--KLFVGGLSWETSDKELRDHFSAYGEIESIN 306
N++ H G D P + ++ K+FVGG+ + +++E R+ F+ +G +
Sbjct: 218 NEVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDAT 277
Query: 307 VKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKA 441
+ D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 278 LMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 57.2 bits (132), Expect = 1e-09
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +1
Query: 184 SAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 363
S ++ ++ LFVG L +ET+D +L++HF G+I + + T +TG+ +GF F+ F
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFP 277
Query: 364 APDSIDKVMAAGEHT 408
D+ K M G ++
Sbjct: 278 DIDTCMKAMELGHNS 292
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 55.2 bits (127), Expect = 4e-09
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +1
Query: 184 SAEAPGRDDDRK--LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 357
S G+++DRK LFVG L ++S + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 358 FKAP--DSIDKVMAAGEHTINSKK 423
F P D I K + HTI ++
Sbjct: 140 FINPKTDVISKALKF-HHTIYKER 162
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 54.0 bits (124), Expect = 1e-08
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 399
+FVG LS+ ++ +L F G+I+SI + TDP +GR +GF ++ F DS K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 400 EHTI 411
H I
Sbjct: 428 GHFI 431
Score = 52.0 bits (119), Expect = 4e-08
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 196 PGRDDDRK--LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 369
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 370 DSIDKVMAA-GEHTINSKKVD 429
++ +AA G I+ + V+
Sbjct: 315 EAAKAAVAANGTKEIDGRMVN 335
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 52.4 bits (120), Expect = 3e-08
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Frame = +1
Query: 178 DNSAEAPGRD----DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGF 345
DN EA D D + ++VG + + + +EL+ HF++ G + + + D TG +GF
Sbjct: 39 DNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGF 98
Query: 346 AFIVFKAPDSIDKVMAAGEHTINSK--KVDPKK 438
A+I F P + + ++ + KV PK+
Sbjct: 99 AYIEFSEPSLVPNALLLNGSMLHERPLKVTPKR 131
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 51.2 bits (117), Expect = 7e-08
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +1
Query: 178 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 357
D+ + +D R +FVG L++E ++ L +F G I+ + + DP T +GFA+I
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 358 FKAPDSIDKVMAAGE 402
FK +DK + E
Sbjct: 318 FKDTMGVDKALLLNE 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 51.2 bits (117), Expect = 7e-08
Identities = 26/67 (38%), Positives = 38/67 (56%)
Frame = +1
Query: 160 GGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSR 339
G G +S RDD L V LS +T ++ELRD F +G I+ + + D TGR++
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Query: 340 GFAFIVF 360
GFAF+ +
Sbjct: 244 GFAFVSY 250
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 47.6 bits (108), Expect = 8e-07
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +1
Query: 205 DDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 363
D + +F+ LS++T + ++ F+ YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 47.2 bits (107), Expect = 1e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVM 390
LF+ L E D+ L+ FSA+G I S + TD G+S+GF F+ + P+ +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Score = 34.3 bits (75), Expect = 0.008
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 399
L+VG L ++ L + F++ G + SI V D T RS G+A++ F + +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 400 EHTI 411
+T+
Sbjct: 142 NYTL 145
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 6e-06
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +1
Query: 208 DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKV 387
D +++G L ++ ++ ++ FS +GE IN+ D TG+S+GFAF+ K D V
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL--KYEDQRSTV 86
Query: 388 MAAGEHTINSKKVD 429
+A T N K +D
Sbjct: 87 LAVDNMT-NVKLLD 99
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.4 bits (100), Expect = 8e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 154 EHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGE-IESINVKTDPNTG 330
E G G G A + VG LS++ ++ +L D F GE + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFF---GEGVTSIRLVIDPLTE 130
Query: 331 RSRGFAFIVFKAPDSIDKVMA-AGE 402
RSRGF ++ F+ D++ +A +GE
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGE 155
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK----APDSIDKV 387
++VG L W TSD+ L D F+ G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 43.6 bits (98), Expect = 1e-05
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 130 DNQLNGNSEHGGGDGQDNSAEAPGRDD-DRKLFVGGLSWETSDKELRDHFSAYGEIESIN 306
+++++ N+E D ++ + G ++ LFV G++ + EL+ FS +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 307 VKTDPNTGRSRGFAFIVF 360
+ +P T SRGF F+ F
Sbjct: 132 IMREPVTKASRGFGFLSF 149
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 43.2 bits (97), Expect = 2e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVF 360
LFV L+++T +L + FS G I+ V T+P TG +RG+ F+ F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 39.5 bits (88), Expect = 2e-04
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 154 EHGGGDGQDNSAEAPGRDDDR---KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 324
+ G NS RD++ +FV L +E +++EL +HF +G + + DP
Sbjct: 254 DSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPA 313
Query: 325 TGRSRGFAFIVFK 363
T RS G FI F+
Sbjct: 314 TDRSLGRGFIKFR 326
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +1
Query: 178 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 357
D + + G + ++FV +S + ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCIS 141
Query: 358 FKAPDSI 378
F SI
Sbjct: 142 FDKRSSI 148
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.3 bits (95), Expect = 3e-05
Identities = 20/73 (27%), Positives = 41/73 (56%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 399
+FVG + ++ S++++ + F+ G +++ + DP TG +G+ F F DS MA
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFF--DSETTAMAV- 65
Query: 400 EHTINSKKVDPKK 438
+N+ ++ P+K
Sbjct: 66 -RKLNNSELGPRK 77
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.9 bits (94), Expect = 4e-05
Identities = 23/93 (24%), Positives = 43/93 (46%)
Frame = +1
Query: 115 QDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEI 294
+D+ D++ + + +S + D R +FV L+ + +EL D F G +
Sbjct: 207 EDLRDDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPV 266
Query: 295 ESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMA 393
+ D +GRS+G A++ F DS+ +A
Sbjct: 267 RDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.5 bits (88), Expect = 2e-04
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 217 KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDK 384
+LFVG L + +D+ L FS Y + V D G++RGF F+ FK D K
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLK 85
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.1 bits (87), Expect = 3e-04
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +1
Query: 124 TTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI 303
T +Q+ + + + S + DD ++FVG LS T E+R F G + +
Sbjct: 14 TVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKV 73
Query: 304 NVKTDPNTGRSR----GFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKK 438
+ +R G AF+ F + +DK + T+N K +D ++
Sbjct: 74 TIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 37.9 bits (84), Expect = 7e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 399
L+VG L +K++R +FS +G + + + + TG S+ +AFI F++ D + V+A
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD-VANVVAET 165
Query: 400 EH 405
H
Sbjct: 166 MH 167
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 178 DNSAEAPGR--DDDRKLFVGGLSWETSDKELRDHFSAYGEIESI 303
++ PG+ D+ ++VG + SD+E+ HFS YG++ESI
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 35.9 bits (79), Expect = 0.003
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 247 TSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKV 426
T +L D FS +G I S + PN+G S+G+ F+ F+ I+ + A + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR---QIEAAVRA-KDTLNGMMV 450
Query: 427 DPKK 438
K+
Sbjct: 451 GKKR 454
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.5 bits (83), Expect = 0.001
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 369
++VG + +E +++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.5 bits (83), Expect = 0.001
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 127 TDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHF-SAYGEIESI 303
T++ N GGG + + ++A + +FVG LS ++ ++ F S Y +S
Sbjct: 161 TNHLFKLNWASGGGLREKSISKA----SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSA 216
Query: 304 NVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGE 402
+ TDP T SRG+ F+ F D D+ A E
Sbjct: 217 KIMTDPQTNVSRGYGFVRF--TDENDQKSALAE 247
Score = 30.7 bits (66), Expect = 0.10
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTG 330
+FVGGLS S++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.1 bits (82), Expect = 0.001
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGE-IESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAA 396
LFVG L ++ L D FSA G+ +++ V D N GRS+G+ F+ + + ++ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 208 DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKA-PDSIDK 384
+ R+L+V + ++ ++K++ F YG++ES+ + N + +GF ++V D+ +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 385 VMAAGEHTIN 414
+ AAG+ N
Sbjct: 813 LSAAGKQLGN 822
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.006
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 363
LF+ LS++ + +E+ D F YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.7 bits (76), Expect = 0.006
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFI-VFKAPDSIDKV 387
++VG LS+ T+++++ FS GEI I + D T GF F+ F+ D++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.3 bits (75), Expect = 0.008
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 211 DRKLFVGGLSWETSDKELRDHFSAYGEIESINV--KTDPNTGRSRGFAFIVFKAPD 372
+++++VGGLS +L FS +G + ++ + K+ P G + FA++ F+ +
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.7 bits (71), Expect = 0.026
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 256 KELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 369
++L + FS +G I+S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.045
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 178 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 357
D+ A+ D K+++ L + ++ + +G++ S + + G S+GF F
Sbjct: 298 DDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCE 357
Query: 358 FKAPDSIDKVMAA--GEHTINSK 420
FK P + ++ G+ T +K
Sbjct: 358 FKNPSDAEVAISGLDGKDTYGNK 380
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.045
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 208 DDRKLFVGGLSWETSDKELRDHF-SAYGEIESINVKTDPNTGRSRGFAFIVFKAP 369
++ K+ V L + ++ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.14
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 214 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 324
R +F+G L +KE+ + F +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.32
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 190 EAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI 303
E P LF+ G+ E +D ++R HF YG ++S+
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 0.73
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 214 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 324
R +F+G L ++ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 27.5 bits (58), Expect = 0.97
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 181 NSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 324
N A A R +++G + + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 337 RGFAFIVFKAPDSIDKVMAAGEHTINSKK 423
RGFA IVF A S ++V G H +N K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 3.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 211 DRKLFVGGLSWETSDKELRDHFSAYGEI 294
+ +LFVG + + + +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 220 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNT 327
L+V L TS + FSAYG ++ I + + N+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNS 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,264
Number of Sequences: 5004
Number of extensions: 35036
Number of successful extensions: 127
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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