Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N16
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 203 3e-53
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.10
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.10
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.10
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.10
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.10
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.10
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.56
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.56
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.56
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 27 5.2
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 27 5.2
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 27 5.2
Z66494-6|CAE48497.1| 423|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 26 9.1
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 26 9.1
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 9.1
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 9.1
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 26 9.1
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 203 bits (496), Expect = 3e-53
Identities = 93/131 (70%), Positives = 108/131 (82%)
Frame = +2
Query: 14 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 193
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 194 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKSLVKNAIVVVDATPFRQWYESH*LLP 373
D+GNF+W SE +TRKTRI+D +YNA+NNELVRTK+LVK AI+ VDA PFRQWYE+H LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 374 LGRKKGAKLTE 406
L RKK AKL+E
Sbjct: 121 LARKKNAKLSE 131
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.56
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.56
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.56
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 385 LPSEWQQLVAFIPLPERRGIHHDNSI 308
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 27.1 bits (57), Expect = 5.2
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +2
Query: 158 RGGNTKYRALRLDTGNFAWGSECSTR--KTRIIDVV-YNASNNELVRTKSLVKNAIVVVD 328
RG N K R +D E + R K R I + +N E V TK L+K A++ V+
Sbjct: 132 RGANGKMRYSDVDYLETWKALEDAHRSGKIRSIGLANFNIGQVEQVWTKGLIKPAVLQVE 191
Query: 329 ATPFRQWYESH*LLPLGRKKGAKLT 403
PF E + R+KG LT
Sbjct: 192 MNPFLDQEE---IRQFCREKGIILT 213
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 385 LPSEWQQLVAFIPLPERRGIHHDNSI 308
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>Z66494-6|CAE48497.1| 423|Caenorhabditis elegans Hypothetical
protein C34C6.5b protein.
Length = 423
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 301 QALGTHQFIVRGIINNINNTSLAG*TFRSPCEVSSIKTQGTIFSV 167
++LG H+F V G I + N S G P + +FSV
Sbjct: 209 KSLGHHRFTVMGFIRSCNLRSYKGRLTYRPYKPKGFHPSSNVFSV 253
>Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical
protein C34C6.5a protein.
Length = 473
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 301 QALGTHQFIVRGIINNINNTSLAG*TFRSPCEVSSIKTQGTIFSV 167
++LG H+F V G I + N S G P + +FSV
Sbjct: 259 KSLGHHRFTVMGFIRSCNLRSYKGRLTYRPYKPKGFHPSSNVFSV 303
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 95 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 226
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 95 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 226
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 161 GGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKSLVKNAIVV 322
GG T R LR A +C +++ +V ++ ++ELV T N +++
Sbjct: 583 GGGTADRCLRFWNTLTAQPMQCVDTGSQVCNVAWSKHSSELVSTHGYSFNHVII 636
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 147 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 58
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 147 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 58
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 224 CSTRKTRIIDVVYNASNNELVRTKSLVKNAIVVVDATPFRQ 346
CS + I ++A+NN ++ K+ N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,220,609
Number of Sequences: 27780
Number of extensions: 215382
Number of successful extensions: 551
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -