Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N15
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 75 5e-15
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 27 1.4
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 26 2.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 3.1
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 5.5
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 5.5
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 24 7.2
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 24 9.6
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 24 9.6
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 24 9.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 24 9.6
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 24 9.6
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 24 9.6
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 24 9.6
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 24 9.6
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 74.5 bits (175), Expect = 5e-15
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Frame = +1
Query: 4 SAEVQYHALSLANNGFKVNIITYVETTPLTEITEN-PNIQISKLHPLD-YNKGPQLLQYV 177
S +QYHA+S A G+KV+++ Y + E+ NI+ + L Y + LQ++
Sbjct: 38 SPRMQYHAVSFAKLGWKVDLLGYQHPGSSVGLFESHENIRFYPIPSLPAYLQPKNRLQFL 97
Query: 178 ----AKTIWQSISLLLTLFISGKCHYLLCQNPPAIPTLPICSVYCLVARVQLIIDWHNYG 345
K + Q ++L LF+ +L QNPP IP I ++ + IIDWHN+G
Sbjct: 98 FLGPLKVLHQFLALNWALFVRKPASFLFIQNPPCIPVFFIAQCLHILRGTKFIIDWHNFG 157
Query: 346 YSLMAMSLHRDH 381
YS++A+ L + H
Sbjct: 158 YSILALKLGKQH 169
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 1.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 93 RNNRKPQYSNFKTASIRLQQRPSITSICSENYMAKHKFAFNLIY--KWKMPLFAVS 254
R++ PQ +F + + +TS S A F+F ++Y WK PL+ +S
Sbjct: 63 RSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLYRIS 118
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 103 ENPNIQISKLHPLDYNKGPQLLQYVAKTI 189
E PN ++S+LH + G Q+ ++++ TI
Sbjct: 312 EFPNTKVSRLHKCLSDNGGQISEFLSSTI 340
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +3
Query: 87 AHRNNRKPQYSNFKTASIRLQQRPSITSIC---SENYMAK 197
AH+++RK + + +S R ++PSI S +E++ AK
Sbjct: 1326 AHQDSRKSLHRHLSRSSSRASKKPSIVSTTGPFNESFSAK 1365
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 177 SENYMAKHKFAFNLIYKWKMP-LFAVSEPTSHSN 275
S + H FA N + WK P L ++ T+H+N
Sbjct: 347 SNEIVTTHGFAKNQVSLWKYPSLKNIANLTAHTN 380
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 5.5
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +1
Query: 22 HALSLANNGFKVNIITYVETTPLTEITENPNIQISKLHPLDYNKGPQLLQY 174
H SL + I Y ET P E SKL L G QLL Y
Sbjct: 108 HVESLNKGRRLIEIWKYYETAPGQSSFEGQTSSDSKLQTLLNLDGQQLLSY 158
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 237 PLFAVSEPTSHSNITHMQCVLLGCSSPVN 323
PLF VSE S +T+ CV + C +N
Sbjct: 402 PLF-VSEKLSIQEVTYAHCVRIFCEHVMN 429
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 193 QSISLLLTLFISGKCHYLLCQNP 261
Q + L+ L KC +L C NP
Sbjct: 162 QGMESLIKLLPKEKCEHLCCSNP 184
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 117 SNFKTASIRLQQRPSITSICSENYMAKHKFAFNLIYKWKMPLFAV 251
S++ T + P TS + +M+ +A +++YK K+PL V
Sbjct: 134 SSWPTCIAYVVDTPRATS--TSTWMSSMLYACSMLYKAKLPLIIV 176
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/24 (37%), Positives = 9/24 (37%)
Frame = -1
Query: 301 SNTHCIWVMLEWLVGSDTANNGIF 230
S HC W WL G A F
Sbjct: 403 SYLHCFWCSASWLAGISLAKKKNF 426
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Frame = +1
Query: 121 ISKLHPLDYNK---GPQLLQYVA 180
+ KLHPL+YN+ QLL ++A
Sbjct: 465 VLKLHPLEYNECVAAAQLLDHLA 487
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 186 YMAKHKFAFNLIYKWKMPLFAVSEPTSHSNITHMQ 290
++ + KF L K + F ++ PTSHSN+T +Q
Sbjct: 77 HIGRPKFNIELFTK-NIKQF-LNYPTSHSNVTRIQ 109
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 23.8 bits (49), Expect = 9.6
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 382 SDHDVMTSPLKNIHS-YANL*LTGLEQPSNTHCIWVMLEWLVG-SDTANNGIFHL*IRLK 209
SD+D T L N HS +L G Q S C ++ + D ++ G+F L +
Sbjct: 86 SDNDTFTFDLSNFHSQIIHLRFKGTRQQSEFFCDRLVRQLHASLEDASSVGLFLLSL-AS 144
Query: 208 ANLCFA 191
+CF+
Sbjct: 145 ERVCFS 150
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +3
Query: 90 HRNNRKPQYSNFKTASIRLQQRPSITSICSENYMAKHK 203
H R PQYS + S+ P +EN KH+
Sbjct: 540 HTLPRSPQYSTVDSNSVLSPAMPKGYMFVNENQSMKHE 577
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 78 NYTAHRNNRKPQYSNFKTASIRLQQRPSITSICSENYMAKH 200
+Y++ + P Y+NF S PS+++I + KH
Sbjct: 82 DYSSQYLHPTPPYTNFDDESPSSPTHPSVSNITVDGDSKKH 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,875
Number of Sequences: 5004
Number of extensions: 35227
Number of successful extensions: 83
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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