Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N15
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.17 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   1.6  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   2.8  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   2.8  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   2.8  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   2.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   2.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   2.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   2.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   2.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   4.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   4.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   4.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   4.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    20   8.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   8.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.17
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 234 MPLFAVSEPTSHSNITHMQCVLLGCSSP 317
           +PL A+ EP+ +  + H Q   + CS P
Sbjct: 368 IPLSAIPEPSKNPAMGHWQMSCVACSPP 395


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 262 PAIPTLPICSVYCL 303
           P IP LP+  VYC+
Sbjct: 783 PRIPILPMIPVYCV 796


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSNFKTASIRLQQRPSITSICSENY 188
           NY  + NN KP Y N     I ++Q P    I   N+
Sbjct: 323 NYNNYNNNYKPLYYNI----INIEQIPVPVPIYCGNF 355


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           NY  + NN KP Y N
Sbjct: 90  NYNNYNNNYKPLYYN 104


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           NY  + NN KP Y N
Sbjct: 90  NYNNYNNNYKPLYYN 104


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           NY  + NN KP Y N
Sbjct: 90  NYNNYNNNYKPLYYN 104


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           NY  + NN KP Y N
Sbjct: 90  NYNNYNNNYKPLYYN 104


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           NY  + NN KP Y N
Sbjct: 323 NYNNYNNNYKPLYYN 337


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           NY  + NN KP Y N
Sbjct: 323 NYNNYNNNYKPLYYN 337


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           NY  + NN KP Y N
Sbjct: 323 NYNNYNNNYKPLYYN 337


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           NY  + NN KP Y N
Sbjct: 312 NYNNYNNNYKPLYYN 326


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 69  LCGNYTAHRNNRKPQYSNF 125
           L  NY  + NN K  Y+N+
Sbjct: 318 LSNNYNYNNNNYKYNYNNY 336


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 60   HYYLCGNYTAHRNNRKPQYSNFKTA 134
            HY +C NY    ++ +P Y   ++A
Sbjct: 931  HYGVCSNYLREISDGEPLYVFVRSA 955


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           N T H NN K  Y+N
Sbjct: 86  NNTIHNNNYKYNYNN 100


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           N T H NN K  Y+N
Sbjct: 86  NNTIHNNNYKYNYNN 100


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           N T H NN K  Y+N
Sbjct: 87  NNTIHNNNYKYNYNN 101


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           N T H NN K  Y+N
Sbjct: 87  NNTIHNNNYKYNYNN 101


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           N T H NN K  Y+N
Sbjct: 87  NNTIHNNNYKYNYNN 101


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSN 122
           N T H NN K  Y+N
Sbjct: 87  NNTIHNNNYKYNYNN 101


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 75  GNYTAHRNNRKPQYS 119
           G+  A RN+R P YS
Sbjct: 95  GSQLAMRNDRSPSYS 109


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 75  GNYTAHRNNRKPQYS 119
           G+  A RN+R P YS
Sbjct: 543 GSQLAMRNDRSPSYS 557


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 227 VENAIICCVRTHQPFQ 274
           V N+ I C   HQP Q
Sbjct: 323 VNNSAIGCWNEHQPLQ 338


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 78  NYTAHRNNRKPQYSNFK 128
           N T H NN    Y+N K
Sbjct: 309 NKTIHNNNNYNNYNNKK 325


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +2

Query: 239 IICCVRTHQPFQHYPY 286
           ++ CV   QP++ +P+
Sbjct: 99  VVSCVTKDQPYRPHPH 114


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +2

Query: 239 IICCVRTHQPFQHYPY 286
           ++ CV   QP++ +P+
Sbjct: 99  VVSCVTKDQPYRPHPH 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,884
Number of Sequences: 438
Number of extensions: 2641
Number of successful extensions: 25
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)