Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N14
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   105   3e-24
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   2.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   3.3  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   4.4  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   5.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.8  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   7.7  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    24   7.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  105 bits (251), Expect = 3e-24
 Identities = 47/101 (46%), Positives = 70/101 (69%)
 Frame = +2

Query: 98  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMRQIRISLRGHSIVLMGKDTMMRKAIKDHL 277
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGK+TM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 278 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP 400
              P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + AP
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAP 108


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 50  PYFTQSKMGREDKATWKSNY 109
           PYF Q+ M   D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 9    GLCVFVLSLNFSEVPTSLNPRWVGRTRLPGS 101
            GLC   + L+   +  ++NP ++GR +LP +
Sbjct: 1971 GLCQSPILLDAPTIFVTMNPGYLGRFKLPSN 2001


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 244 HHDEESHQGPS*NKSSSRKTASSHQG 321
           HH+ +     S   S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 257 SSSWCLCP*AQCCDHAMKYGSVASVASLH 171
           S S  + P ++ CD A KYG++  +  +H
Sbjct: 317 SMSGNVAPISEICDLAKKYGAITFLDEVH 345


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 5   EGSVRICLVLKFLRSP 52
           E SV++C VLK LRSP
Sbjct: 361 EVSVKVCHVLKELRSP 376


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 169 VRTHYET-FWVFVQQLDDFNEVIGLPGSLVLP 77
           V  H ET  +++VQ   + N+ + + GSL  P
Sbjct: 477 VAMHVETTLYIYVQSFQNANQTVSICGSLPEP 508


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 325 CWLCLHPW 348
           CW+CL PW
Sbjct: 317 CWVCLGPW 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,915
Number of Sequences: 5004
Number of extensions: 40451
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)