Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N14
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 106 6e-24
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 106 7e-24
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 106 7e-24
02_04_0427 - 22809481-22810335 29 1.0
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 29 1.8
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 2.4
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 28 3.2
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 4.2
07_03_0662 + 20431448-20432767 27 5.6
01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598 27 5.6
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 7.3
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 7.3
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 27 7.3
06_01_1085 - 8886868-8887556,8887629-8888574 27 7.3
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 7.3
04_01_0404 - 5297341-5297970,5298304-5299179 27 7.3
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 7.3
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 26 9.7
05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583... 26 9.7
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 26 9.7
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561... 26 9.7
02_04_0418 - 22742220-22743108,22743393-22743397 26 9.7
01_06_1380 - 36807339-36807562,36807672-36808050 26 9.7
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 106 bits (255), Expect = 6e-24
Identities = 55/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = +2
Query: 77 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMRQIRISLRGHSIVLMGKDTMMR 256
+ KA K Y K+ QLLDEY K I ADNVGS Q+++IR LRG SIVLMGK+T++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 257 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP 400
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV AP
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAP 113
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 106 bits (254), Expect = 7e-24
Identities = 55/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = +2
Query: 77 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMRQIRISLRGHSIVLMGKDTMMR 256
+ KA K Y K+ QLLDEY K I ADNVGS Q+++IR LRG SIVLMGK+T++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 257 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP 400
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV AP
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAP 113
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 106 bits (254), Expect = 7e-24
Identities = 55/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = +2
Query: 77 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMRQIRISLRGHSIVLMGKDTMMR 256
+ KA K Y K+ QLLDEY K I ADNVGS Q+++IR LRG SIVLMGK+T++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 257 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP 400
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV AP
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAP 113
>02_04_0427 - 22809481-22810335
Length = 284
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -3
Query: 289 WICFKMVLDGFPHHGVFAHEHNAVTTQ*N---TDLSHLLRA 176
W F+ + FP GVF HE +T Q N DL LL A
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRNYSAYDLEDLLAA 163
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 155 IVGADNVGSQQMRQIRISLRGHSIVLMGKDTMMRKAIKDHLETNPALEKLL 307
++G +NV M RI+ R H+++ +G D +K+ + PA+E+ +
Sbjct: 559 VLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFV 609
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 316 DVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NT 200
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 23 CLVLKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPK 148
CL L+FL T + R K T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 98 KSNYFVKIIQLLDEYPKCF 154
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 203 YGSVASVASLHCPHPL 156
YG +AS SL CP PL
Sbjct: 417 YGGLASAGSLQCPRPL 432
>01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598
Length = 94
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 199 PYFIAWSQHCAHGQRHHDEESHQG 270
P+ S+ C H Q H+ EE+H G
Sbjct: 13 PHHCVCSELCMHTQIHYTEETHTG 36
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 299 KLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP 400
KLLP VGFV RG V +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 229 AHGQRHHDEESHQGPS*NKSSSRKTASSHQGKC 327
A ++ + G S N +SS KTA S Q KC
Sbjct: 740 AEQEQPEENAEASGESGNTNSSHKTAHSSQNKC 772
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 179 SLHCPHPL*NILGIRPTVG 123
S+ CP L +++GI+PTVG
Sbjct: 177 SILCPSSLNSVVGIKPTVG 195
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 182 QQMRQIRISLRGHSIVLMGKDTMMRKAIKDHLETNPALEKLLP 310
++ R+ R +G + +GK T++R A+K+ + +P L L+P
Sbjct: 361 RRRRRRRRHRQGGAGEQLGKMTLLRAAMKEAMRLHPPLPLLIP 403
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 179 SLHCPHPL*NILGIRPTVG 123
S+ CP L +++GI+PTVG
Sbjct: 176 SILCPSSLNSVVGIKPTVG 194
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 251 MRKAIKDHLETNPALEKLLPHI 316
M+ IK+ L NP L LLPH+
Sbjct: 349 MKLVIKETLRLNPVLPLLLPHL 370
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 239 KDTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLE 382
K T RK HL+ N AL K+ V +G L+++ D+L++
Sbjct: 86 KVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 83 DKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMRQIRI 205
D T+ S+YF K++++ ++ K D+ +QMR R+
Sbjct: 272 DAVTYTSDYFPKLMEMAEKLIKQGKAYVDDTPKEQMRSERM 312
>05_02_0031 -
5832475-5832696,5832789-5833064,5833303-5833380,
5833464-5833550,5833639-5833699,5833792-5833880,
5834001-5834098,5834197-5834296,5834876-5834953
Length = 362
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 202 YFIAWSQHCAHGQRHHD 252
YFI+WS + H R HD
Sbjct: 231 YFISWSSYKLHSIRRHD 247
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 179 SLHCPHPL*NILGIRPTVG 123
S+ CP L +++GI+PTVG
Sbjct: 209 SILCPASLNSVVGIKPTVG 227
>04_01_0425 +
5609819-5610331,5610450-5610664,5612720-5612959,
5613122-5613232,5613789-5613987,5614097-5614453
Length = 544
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 188 SVASLHCPHPL*NILGIRPTVG 123
+ AS+ CP +++GI+PTVG
Sbjct: 204 TTASILCPAAANSVVGIKPTVG 225
>02_04_0418 - 22742220-22743108,22743393-22743397
Length = 297
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -3
Query: 358 NKISTGEDKANISLDVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*N---TDLSH 188
N +S +D +++ W F+ + P GVF HE VT + N DL
Sbjct: 117 NLVSGPKDLLHVANTTALSLRPMWRSFETSIVNVPSPGVFGHEPIVVTKRRNYSAYDLED 176
Query: 187 LLRA 176
LL A
Sbjct: 177 LLAA 180
>01_06_1380 - 36807339-36807562,36807672-36808050
Length = 200
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 214 WSQHCAHGQRHHDEESHQGPS*NKSSSRK---TASSHQGKCWLCLHP 345
W Q+ +RHH ++ +G S S S A++H+G L L P
Sbjct: 62 WFQNHKARERHHHKKRRRGASSPDSGSNDDDGRAAAHEGDADLVLQP 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,671
Number of Sequences: 37544
Number of extensions: 280412
Number of successful extensions: 681
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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