Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N13
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   1.1  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    24   3.4  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    24   3.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    24   4.4  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    24   4.4  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    23   7.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    23   7.8  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 190 VLPFFTRGAVNVCLMSPGAQSPGLGWPFKNPSAWSGSLA 74
           +LP  T G     +M+PGA   G+ +PF  P + +  +A
Sbjct: 769 MLPLPTSGV----MMAPGAAKSGMPYPFIQPPSMTNQVA 803


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 188 LTFLYSWGSKCVSHV 144
           L+  ++WGS C+SH+
Sbjct: 442 LSSFFTWGSICLSHI 456


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 251 CVKHFFVFLHVSRC 210
           C++HFF   H SRC
Sbjct: 347 CLQHFFNISHPSRC 360


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 197 RWCLTFLYSWGSKCVSH--VTRSTVT 126
           RWC    YSW +  +S   +TR+++T
Sbjct: 338 RWCRVKEYSWNTSVLSDEALTRNSLT 363


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 188 LTFLYSWGSKCVSHV 144
           L+  ++WGS C+SH+
Sbjct: 442 LSNFFTWGSICLSHI 456


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 183 GKTPTATVGTSTNMQEHEEVFYTIPLQ 263
           GKT  A    + ++++ + V YT P++
Sbjct: 225 GKTVVAEYAVAQSLRDKQRVIYTSPIK 251


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 156  TFT-APRVKKGKTPTATVGTSTNM 224
            TFT  P      TPT T  TSTN+
Sbjct: 940  TFTPTPTTTTTPTPTTTSATSTNV 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,078,093
Number of Sequences: 5004
Number of extensions: 18971
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)