Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N12
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        31   0.048
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   0.78 
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    25   2.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   3.2  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   4.2  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    24   5.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    23   9.6  
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    23   9.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    23   9.6  

>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 31.1 bits (67), Expect = 0.048
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 142 EEINGDTDDIQHDK-DKTQKKTAKHDSGVADLEKVTDYAEEKEISSQDI 285
           EE++   + IQ  + D+T +  A HDS      K     EEKE SS D+
Sbjct: 356 EEVDDAKESIQEKEIDETTESKATHDSSETSSSKELPKEEEKESSSFDL 404


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 163 DDIQHDKDKTQKKTAKHDSGVADLEKVTDYAEEKEISSQDISG 291
           D IQ  KDKTQ++   H   +ADL    +  E KE  S  ++G
Sbjct: 129 DIIQLYKDKTQERKLPHVFAIADL-AYNNLLENKENQSILVTG 170


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 142 EEINGDTDDIQHDKDKTQKKTAKHDSGVADLEKVTDYAEEKE-ISSQDISGALSLIGDRR 318
           EE+N D +D +  +++  +K    D       K     EEKE  ++ D+S +++  G +R
Sbjct: 173 EELNSDEEDAEQAEEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDSVN--GKKR 230

Query: 319 NKEAA 333
             E A
Sbjct: 231 KTEPA 235


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 139 DEEINGDTDDIQHDKDKT---QKKTAKHD--SGVADLEKVTDYAEEKEISSQDISG 291
           +EE   D ++ + D+D++   ++K A+HD  +   D+E   D  EE+    +D  G
Sbjct: 113 EEEDEEDDEEDEEDEDESGGGRRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEIG 168


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 127 TKMADEEINGDTDDIQHDKDKTQKKTAKHDSGVADLEKV---TDYAEEKEISSQD 282
           T   +E + GD     ++  ++Q KT KH + +   E V     Y E ++I + D
Sbjct: 358 TATMNEPVTGDQYLSLNNGTESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTID 412


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 157 DTDDIQH-DKDKTQKKTAKHDSGVADLEKVTDYAEEK 264
           D  DI+  +KDK +KK +K +      ++ T   EEK
Sbjct: 167 DDGDIESSEKDKKKKKKSKENDDAPKKDRKTRKKEEK 203


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 265 EISSQDISGALSLIGDRRNK 324
           E+S+ +++ A+SL+G  R K
Sbjct: 432 EVSTDEVASAISLVGRLRRK 451


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 142 EEINGDTDDIQHDKDKTQKKTAKH 213
           EEI    DD + DKDK  K   KH
Sbjct: 51  EEIVTIFDDEETDKDKALKTIRKH 74


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -2

Query: 220 RYRAL-RFSSVFYPCHAEYH 164
           RY+ L  FSS F PC  E H
Sbjct: 475 RYKGLFYFSSAFRPCPIEQH 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,055
Number of Sequences: 5004
Number of extensions: 19409
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)