Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N12
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   0.76 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   4.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   7.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.4  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 279 LRGNFLLFCIVSNFL*VCYTAIVL 208
           L G F+LF ++ +   +C T +VL
Sbjct: 302 LLGKFVLFTMILDTFSICVTVVVL 325


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 270 NFLL-FCIVSNFL*VCYTAIVLCGFLLCFILVML 172
           NFL+ FC+    +  CY    + G L C I  ML
Sbjct: 98  NFLMMFCMSPPMVINCYYETWVLGPLFCQIYAML 131


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 279 LRGNFLLFCIVSNFL*VCYTAIVL 208
           L G +L+F ++   + +C T +VL
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVL 329


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 279 LRGNFLLFCIVSNFL*VCYTAIVL 208
           L G +L+F ++   + +C T +VL
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVL 329


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +1

Query: 115 LIQLTKMADEEINGDTDDIQHDKDKTQKKTAKHDSGVADLEKVTDYAEEKEISSQDISGA 294
           L+ + K A+       +  +    K ++KTA     V    K    +EEK I+   ++  
Sbjct: 768 LLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTE 827

Query: 295 LSLI 306
            S++
Sbjct: 828 QSVV 831


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 36 TFDKTKKNYTS 4
          TFDK  KNYT+
Sbjct: 56 TFDKGPKNYTT 66


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 264 LLFCIVSNFL*VCYTAIVLCGFLLCFILVML 172
           ++FC+    +  CY    + G L C I  ML
Sbjct: 67  MMFCMSPPMVINCYYETWVLGPLFCQIYAML 97


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 134 WQTKKLMEIQMIFSMTRIKHRRKP 205
           W+ +K+ EI +      + +RR+P
Sbjct: 495 WKVEKIQEIYLEALRAYVDNRRRP 518


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 109 CLLIQLTKMADEEIN 153
           C+++   KM+DE+I+
Sbjct: 124 CIIVMPEKMSDEKIS 138


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 258 REGNFLSGYIGCTFTN 305
           ++G+F++ Y+G   TN
Sbjct: 517 KKGSFVTQYVGEVITN 532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,617
Number of Sequences: 438
Number of extensions: 1240
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)