Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N10
         (229 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    29   0.083
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    26   0.58 
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   1.8  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    24   2.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    24   2.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   3.1  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    23   4.1  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    23   7.2  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    23   7.2  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    23   7.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        22   9.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    22   9.5  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    22   9.5  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1088

 Score = 29.1 bits (62), Expect = 0.083
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = -3

Query: 182  FNSLFDYLTHIVYNELIFFCQIVTFFHLHDLNATISIPSYL*TVKYK 42
            +  +FD L  + ++ L+     V   ++H +N ++++P Y+  V+Y+
Sbjct: 876  YKEVFDSLQRLQFDALLLIRMEVRLQYIHSINQSVNLPDYV--VEYR 920


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 79  IVAFKSWR*KNVTIWQKKINSL*TM 153
           I AFK W     T W++K+N +  M
Sbjct: 55  IAAFKFWTSGRTTTWERKMNGMVVM 79


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 93  VMEVKECNDLAEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVN 224
           V+ V +C+ +     FI+ D   + K AI  S G       K+N
Sbjct: 67  VLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKIN 110


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 102 VKECNDLAEENQFIVDDVSKIIK 170
           V E  DL E+N F  D+++ IIK
Sbjct: 13  VPELEDLLEKNIFNRDEINNIIK 35


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 141 IVDDVSKIIKEAIENSIGGAA 203
           ++ DV+  +KE +ENS+   A
Sbjct: 20  VITDVASAVKELVENSLDSGA 40


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 227  LIYFIVLVSGASN*IFNSLFDYLTHIVYNELIFFCQIVTFFHLHDL 90
            + YF+  V   S   +NS+FDY+ + +   ++    IV  F L  L
Sbjct: 1125 MYYFLPTVFSLSGSYWNSIFDYIKYAMKMSVV-DAPIVKSFELFAL 1169


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 108 ECNDLAEENQFIVDDVSKIIKEAIENSI 191
           E +DL +ENQF   D SKI +EA E +I
Sbjct: 57  ELSDL-DENQFENFDESKIGREAEEPTI 83


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 114 NDLAEENQFIVDDVSKIIKEAIE 182
           +D+AE+    +D+V KI  E +E
Sbjct: 460 SDIAEDAALQIDEVRKISDEEVE 482


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 161 LTHIVYNELIFFCQIVTFFHLHDLNATISI 72
           +THI+   L F   I  FF +  +N  ++I
Sbjct: 88  ITHIISAFLSFLSAIFVFFSIFLVNQAVNI 117


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 167 DYLTHIVYNELIFFCQIVTFFH 102
           DYL H+V+  L +  ++   FH
Sbjct: 285 DYLVHLVHETLQYSVRLEQHFH 306


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 102  VKECNDLAEENQFIVDDVSKIIKEAIENSIG 194
            +KE + +AEE + +V+ V KI +E     IG
Sbjct: 942  IKEISAIAEEVKNLVEKVIKIDREYHRYLIG 972


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 138 IDFLLPNRYILSPP*LKRNDFNPK 67
           +DF+ P   +  PP LK   F  K
Sbjct: 49  LDFIRPKEKVTLPPLLKEVSFQQK 72


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 90  KRNDFNPKLSLNS 52
           K+NDF+  +SLNS
Sbjct: 94  KKNDFDDNMSLNS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,190
Number of Sequences: 5004
Number of extensions: 14172
Number of successful extensions: 53
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)