Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N10
         (229 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56255-1|AAB03318.1|  113|Homo sapiens CW-1p protein.                  54   8e-08
D50663-1|BAA09317.1|  113|Homo sapiens TCTEL1 protein.                 54   8e-08
CR456931-1|CAG33212.1|  113|Homo sapiens TCTEL1 protein.               54   8e-08
BC105588-1|AAI05589.1|  113|Homo sapiens dynein, light chain, Tc...    54   8e-08
BC029412-1|AAH29412.1|  113|Homo sapiens dynein, light chain, Tc...    54   8e-08
AL591025-2|CAH70177.1|   92|Homo sapiens dynein, light chain, Tc...    54   8e-08
AL591025-1|CAH70176.1|  113|Homo sapiens dynein, light chain, Tc...    54   8e-08
AL589931-2|CAI95304.1|   92|Homo sapiens dynein, light chain, Tc...    54   8e-08
AL589931-1|CAI95303.1|  113|Homo sapiens dynein, light chain, Tc...    54   8e-08
U02556-1|AAA57444.1|  116|Homo sapiens protein ( Human RP3 mRNA,...    31   0.87 
CR542213-1|CAG47009.1|  116|Homo sapiens TCTE1L protein.               31   0.87 
CR450320-1|CAG29316.1|  116|Homo sapiens TCTE1L protein.               31   0.87 
BC000968-1|AAH00968.1|  116|Homo sapiens dynein, light chain, Tc...    31   0.87 

>U56255-1|AAB03318.1|  113|Homo sapiens CW-1p protein.
          Length = 113

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>D50663-1|BAA09317.1|  113|Homo sapiens TCTEL1 protein.
          Length = 113

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>CR456931-1|CAG33212.1|  113|Homo sapiens TCTEL1 protein.
          Length = 113

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>BC105588-1|AAI05589.1|  113|Homo sapiens dynein, light chain,
           Tctex-type 1 protein.
          Length = 113

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>BC029412-1|AAH29412.1|  113|Homo sapiens dynein, light chain,
           Tctex-type 1 protein.
          Length = 113

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>AL591025-2|CAH70177.1|   92|Homo sapiens dynein, light chain,
           Tctex-type 1 protein.
          Length = 92

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>AL591025-1|CAH70176.1|  113|Homo sapiens dynein, light chain,
           Tctex-type 1 protein.
          Length = 113

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>AL589931-2|CAI95304.1|   92|Homo sapiens dynein, light chain,
           Tctex-type 1 protein.
          Length = 92

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>AL589931-1|CAI95303.1|  113|Homo sapiens dynein, light chain,
           Tctex-type 1 protein.
          Length = 113

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 123 AEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           AEE  F+VD+VS I+KEAIE++IGG AYQ +KVNQ
Sbjct: 7   AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQ 41


>U02556-1|AAA57444.1|  116|Homo sapiens protein ( Human RP3 mRNA,
           complete cds. ).
          Length = 116

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 VKECNDLAEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           ++E +   +E  F  ++   I+KE ++  +GG  Y  N +NQ
Sbjct: 1   MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQ 42


>CR542213-1|CAG47009.1|  116|Homo sapiens TCTE1L protein.
          Length = 116

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 VKECNDLAEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           ++E +   +E  F  ++   I+KE ++  +GG  Y  N +NQ
Sbjct: 1   MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQ 42


>CR450320-1|CAG29316.1|  116|Homo sapiens TCTE1L protein.
          Length = 116

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 VKECNDLAEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           ++E +   +E  F  ++   I+KE ++  +GG  Y  N +NQ
Sbjct: 1   MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQ 42


>BC000968-1|AAH00968.1|  116|Homo sapiens dynein, light chain,
           Tctex-type 3 protein.
          Length = 116

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 VKECNDLAEENQFIVDDVSKIIKEAIENSIGGAAYQDNKVNQ 227
           ++E +   +E  F  ++   I+KE ++  +GG  Y  N +NQ
Sbjct: 1   MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQ 42


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,203,608
Number of Sequences: 237096
Number of extensions: 404427
Number of successful extensions: 753
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 76,859,062
effective HSP length: 54
effective length of database: 64,055,878
effective search space used: 1345173438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)