Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N09
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    23   7.3  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    23   7.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    22   9.6  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    22   9.6  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    22   9.6  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    22   9.6  

>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 93 CPSIQKHFRKNCMKCTY 43
          CP+  KH R+ C K  Y
Sbjct: 40 CPACNKHCRQYCTKPGY 56


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 62  FFLKCFCIEGHNLLILTSYNTYCDSP 139
           F +K F I  H L +  +YN+ C +P
Sbjct: 319 FSIKEFAI--HELNLFNTYNSVCQTP 342


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 41   MYVHFMQFFLKCFCIEGHNLLILT 112
            + VHFM+F LK       NL +LT
Sbjct: 1163 LIVHFMKFVLKKITSMEVNLNVLT 1186


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 66  KNCMKCTYITFCKKKKLHLDLC 1
           K C+K TY    K K   +D C
Sbjct: 271 KQCLKLTYNLLNKDKPCSMDPC 292


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 ILTSYNTYCDSP*DVSDYLWLLMFN 178
           ILTSY  Y  S  DV+ Y    MF+
Sbjct: 607 ILTSYENYKQSFSDVTIYCGTSMFH 631


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 108 NINKLCPSIQKHFRKNCMKCTYIT 37
           N+N +  ++ KHFR   +   Y++
Sbjct: 264 NLNSIRRNLTKHFRNRVLVSLYVS 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 841,368
Number of Sequences: 5004
Number of extensions: 13294
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)