Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N09
(211 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0023 + 11731990-11732185,11732672-11733363 29 0.68
09_02_0196 - 5678744-5679222,5679304-5679937 26 3.6
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 26 3.6
05_02_0053 - 6152204-6152329,6152817-6152981,6154698-6154883,615... 26 3.6
11_04_0300 - 16130589-16131158,16131594-16131680 26 4.8
11_04_0299 + 16127671-16128180,16128217-16128516 26 4.8
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15... 26 4.8
02_02_0483 - 10830978-10831284,10831727-10832232,10832770-10832856 25 6.3
12_02_0541 + 20162313-20162374,20162670-20163419,20164627-201648... 25 8.4
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 25 8.4
11_03_0191 - 11366831-11367676 25 8.4
07_03_0189 + 14862848-14862904,14862936-14863071,14864436-148645... 25 8.4
02_05_0205 + 26755024-26756217 25 8.4
01_05_0169 + 18874799-18875057,18875103-18875338 25 8.4
>01_03_0023 + 11731990-11732185,11732672-11733363
Length = 295
Score = 28.7 bits (61), Expect = 0.68
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2
Query: 11 RCNFFFLQNVMYVHFM-QFFLKCFC------IEGHNLLILTSYNTYCDSP 139
RC+F Q+ +YVH + QFF +C I G++ ++ S N Y P
Sbjct: 104 RCSFVGYQDTLYVHSLRQFFRECDIYGTIDFIFGNSAVVFQSCNLYARRP 153
>09_02_0196 - 5678744-5679222,5679304-5679937
Length = 370
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSEV 75
++FF T+ Y FHA+L EV
Sbjct: 216 RYFFLTRPYPPAFHALLGEV 235
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 90 PSIQKHFRKNCMKCTYITFCK 28
P IQK ++NC C + CK
Sbjct: 280 PKIQKDHKENCCSCGLFSCCK 300
>05_02_0053 -
6152204-6152329,6152817-6152981,6154698-6154883,
6155055-6155078,6155649-6155822
Length = 224
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 35 NVMYVHFMQFFLKCFCIEGHNLLILTSYNTYCDS 136
N++ +H Q FL G L+I+ Y T+C S
Sbjct: 88 NMIDIHSTQEFLDALRDAGDRLVIVEFYGTWCGS 121
>11_04_0300 - 16130589-16131158,16131594-16131680
Length = 218
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSE 72
++FFFT Y FHA+L E
Sbjct: 64 RYFFFTPPYPPAFHALLGE 82
>11_04_0299 + 16127671-16128180,16128217-16128516
Length = 269
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSEV 75
++FF T Y FHA+L EV
Sbjct: 127 RYFFLTPSYPPAFHALLGEV 146
>10_01_0013 +
154098-154101,154513-154673,154773-154847,155071-155571,
155873-156214,158107-158234,158296-158342,160117-160196,
160569-160654,161409-161556,161947-162082,162160-162488,
162953-163169,164547-164572
Length = 759
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 77 FCIEGHNLLILTSYNT-YCD 133
FCI+ HN L Y T YCD
Sbjct: 396 FCIQNHNFLSPYMYGTSYCD 415
>02_02_0483 - 10830978-10831284,10831727-10832232,10832770-10832856
Length = 299
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSE 72
++FF T Y TFHA+L E
Sbjct: 64 RYFFLTPPYPPTFHALLGE 82
>12_02_0541 +
20162313-20162374,20162670-20163419,20164627-20164820,
20165001-20165074,20165094-20165114
Length = 366
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSEV 75
++FF T Y FHA+L EV
Sbjct: 137 RYFFLTPPYPPAFHALLGEV 156
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSEV 75
++FF T Y FHA+L EV
Sbjct: 422 RYFFLTPPYPPAFHALLGEV 441
>11_03_0191 - 11366831-11367676
Length = 281
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSEV 75
++FF T Y FHA+L EV
Sbjct: 127 RYFFLTPPYPPAFHALLGEV 146
>07_03_0189 +
14862848-14862904,14862936-14863071,14864436-14864593,
14864640-14865533,14865634-14865792,14866342-14866623
Length = 561
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 29 LQNVMYVHFMQFFLKCFCIEGHNLLILTS-YNTYCDSP 139
L+NV+ + +QF LKC +E + + + +N Y P
Sbjct: 294 LENVLVLGDLQFLLKCPALEWLTIRMCSQLHNLYAPEP 331
>02_05_0205 + 26755024-26756217
Length = 397
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSEV 75
++FF T Y FHA+L EV
Sbjct: 243 RYFFLTPPYPPAFHALLGEV 262
>01_05_0169 + 18874799-18875057,18875103-18875338
Length = 164
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 16 QFFFFTKCYVCTFHAILSEV 75
++FF T Y FHA+L EV
Sbjct: 67 RYFFLTPPYPPAFHALLGEV 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,973,108
Number of Sequences: 37544
Number of extensions: 69806
Number of successful extensions: 182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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