Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N09
         (211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    32   0.064
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    32   0.064
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    32   0.064
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   1.4  
Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical ...    25   5.6  

>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 31.9 bits (69), Expect = 0.064
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 105 INKLCPSIQKHFRKNCMKCTYIT-FCKKKKLHL 10
           +N    S   H++  CM CTY T +C   KLHL
Sbjct: 588 LNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHL 620


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 31.9 bits (69), Expect = 0.064
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 105 INKLCPSIQKHFRKNCMKCTYIT-FCKKKKLHL 10
           +N    S   H++  CM CTY T +C   KLHL
Sbjct: 610 LNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHL 642


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 31.9 bits (69), Expect = 0.064
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 105 INKLCPSIQKHFRKNCMKCTYIT-FCKKKKLHL 10
           +N    S   H++  CM CTY T +C   KLHL
Sbjct: 610 LNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHL 642


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 108  NINKLCPSIQKHFRKNCMKCTYITFCKK 25
            N+ K+C    K+ +K C KC     CKK
Sbjct: 1284 NVQKMCKKCAKNVQKMCKKCA--KMCKK 1309


>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 5   RSRCNFFFLQNVMYVHFMQFFLKC 76
           +S+ +FFF  NV  +   QFF +C
Sbjct: 288 KSKISFFFFGNVSILKNFQFFFRC 311


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +3

Query: 9    RDAIFFFYKMLCMYIS-CNSF 68
            R++IFFFYK+  ++IS C +F
Sbjct: 1025 RESIFFFYKLYFVFISFCATF 1045


>AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical
           protein ZK105.5 protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 44  YVHFMQFFLKCFCIEGHNLLILTS 115
           Y +F  +F  CFC EG   L+ +S
Sbjct: 35  YPNFNLYFWPCFCFEGSRDLLRSS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,781,254
Number of Sequences: 27780
Number of extensions: 78501
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)