Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N08
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    42   3e-05
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    38   6e-04
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    35   0.005
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    25   2.8  
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    24   6.4  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    24   8.5  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    24   8.5  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    24   8.5  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 41.9 bits (94), Expect = 3e-05
 Identities = 18/31 (58%), Positives = 27/31 (87%)
 Frame = -3

Query: 364 DSEKLKKVISELNGKNVEELIEAGPGKLSSM 272
           ++E+++ +ISELNGKN+EELI AG  KLS++
Sbjct: 35  EAERVESLISELNGKNIEELIAAGNEKLSTV 65


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 37.5 bits (83), Expect = 6e-04
 Identities = 15/31 (48%), Positives = 27/31 (87%)
 Frame = -3

Query: 364 DSEKLKKVISELNGKNVEELIEAGPGKLSSM 272
           +SE+++ +I+ELNGK+++ELI AG  KL+++
Sbjct: 35  ESERIETLINELNGKDIDELIAAGNEKLATV 65


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 34.7 bits (76), Expect = 0.005
 Identities = 14/31 (45%), Positives = 26/31 (83%)
 Frame = -3

Query: 364 DSEKLKKVISELNGKNVEELIEAGPGKLSSM 272
           +SE+++ +I EL+GK+++ELI AG  KL+++
Sbjct: 35  ESERVEALIKELDGKDIDELIAAGNEKLATV 65


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 301 QLTLQHFCH*ARR*PSLVS 357
           QLTL+ FC  ++R P++VS
Sbjct: 163 QLTLEEFCEGSKRDPTIVS 181


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 328 NGKNVEELIEAGPGKLSS 275
           NG+ +EE++ A P KL +
Sbjct: 80  NGEKIEEIVGANPAKLEA 97


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 17  IPPI--YFIETYSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTEA 148
           +PP+  +F  T +  CY    +W  +   +  P+ F  K ++   A
Sbjct: 454 MPPVKPHFDTTLADPCYKLAESWTNSAKNSDDPSKFSSKDIENWSA 499


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 41  TYSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTEAHVV 157
           T + SC + N  W   TS   TP+  + + +  T + V+
Sbjct: 340 TATMSCQATNSAWMAATSLPPTPSEAVCECMDSTRSCVI 378


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 32  FIETYSPSCYSYNINWNKTTSAASTPTLFIMKLVKK 139
           F E    S  +   NW+  T A ST  LF++ +  K
Sbjct: 287 FCEQKDLSYTTVKDNWDNITVAPSTNVLFLLSVPSK 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,384
Number of Sequences: 5004
Number of extensions: 12813
Number of successful extensions: 46
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)