Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N07
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    54   6e-09
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    54   6e-09
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    28   0.26 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   1.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   3.1  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    24   5.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    23   7.3  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 53.6 bits (123), Expect = 6e-09
 Identities = 22/52 (42%), Positives = 33/52 (63%)
 Frame = +2

Query: 143 RSTLNYMVALGVLTVGLSCAAVPLYRIFCQAYSYGGTTGQAEANSSVSGMKP 298
           R+T+ Y+VA+ +  +GL+ AAVPLYR+FC    YGGT    ++  +   M P
Sbjct: 568 RTTIYYLVAISIFALGLTYAAVPLYRLFCSKTGYGGTLNTDQSRMNAERMVP 619


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 53.6 bits (123), Expect = 6e-09
 Identities = 22/52 (42%), Positives = 33/52 (63%)
 Frame = +2

Query: 143 RSTLNYMVALGVLTVGLSCAAVPLYRIFCQAYSYGGTTGQAEANSSVSGMKP 298
           R+T+ Y+VA+ +  +GL+ AAVPLYR+FC    YGGT    ++  +   M P
Sbjct: 568 RTTIYYLVAISIFALGLTYAAVPLYRLFCSKTGYGGTLNTDQSRMNAERMVP 619


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 218 CKVAPQHNLILLSGLPKPPYS*ESIEFYFSD 126
           C V PQ N++++S LP+P YS +    Y +D
Sbjct: 267 CGVTPQ-NVVMMSKLPEPVYSHKPGYMYLTD 296


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 98   NNVVYRGLHDQRSKIRSTLNYMVALGVLTVG-LSCAAVPLYRIFC 229
            NN+++  LH ++  ++  +N + A+GV+  G +S   +PL   FC
Sbjct: 1459 NNILHIQLHRRKRAMKRLVN-VCAIGVIRSGNISQIFLPLLENFC 1502


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 241  TVCLTKYSVKWHRSTT*SYCQDSQSHHIVESRSNF 137
            T  L   S KW+ STT S   ++ S  +  S S F
Sbjct: 3851 TTSLNSNSYKWYNSTTQSVYYNATSSTVPWSNSTF 3885


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 93  QQIMLFTEAYTIREVKFDRLSTIWWLWE 176
           QQI L  +   +R+ K D L+ +  LW+
Sbjct: 57  QQIRLMHKRMLLRDEKIDELAKLEHLWQ 84


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 160 YGGFGSPDSRIKLCC 204
           YGGF    S++ +CC
Sbjct: 594 YGGFSEDASKLTVCC 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,353
Number of Sequences: 5004
Number of extensions: 17222
Number of successful extensions: 31
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)