Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N07
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0929 - 28898627-28898728,28898826-28898906,28899419-288995...    50   4e-07
04_03_0911 + 20767041-20767047,20767119-20769322                       26   4.7  
02_05_0223 - 26943210-26944623,26944741-26945666                       26   6.3  
11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572...    25   8.3  

>03_05_0929 -
           28898627-28898728,28898826-28898906,28899419-28899523,
           28899598-28899670,28900235-28900287,28900987-28901307
          Length = 244

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = +2

Query: 143 RSTLNYMVALGVLTVGLSCAAVPLYRIFCQAYSYGGTTGQAEA 271
           R TL Y++ +    VG S AAVPLYR FCQA  YGGT  + E+
Sbjct: 66  RRTLAYLLGVAAAMVGASYAAVPLYRRFCQATGYGGTVQRRES 108


>04_03_0911 + 20767041-20767047,20767119-20769322
          Length = 736

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 167 ALGVLTVGLSCAAVPLYRIFCQAYSYG 247
           ++G  T    CAA  L    C AYSYG
Sbjct: 315 SIGAATSADECAAACLSSCSCTAYSYG 341


>02_05_0223 - 26943210-26944623,26944741-26945666
          Length = 779

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 235 CLTKYSVKWHRSTT 194
           C+ KY VKW+R+ T
Sbjct: 393 CVAKYGVKWYRTRT 406


>11_01_0694 -
           5719188-5720400,5720439-5721194,5722004-5722247,
           5723862-5723901
          Length = 750

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 239 CMPDKIFCKVAPQHNLILLSGLP 171
           C+ D + CK+ P H  +LL  LP
Sbjct: 476 CLSDHL-CKLVPMHQWVLLCHLP 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,582
Number of Sequences: 37544
Number of extensions: 107591
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)