Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N07
         (299 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR541837-1|CAG46636.1|  276|Homo sapiens COX11 protein.                50   1e-06
BC005895-1|AAH05895.1|  276|Homo sapiens COX11 homolog, cytochro...    50   1e-06
AF044321-1|AAD08645.1|  276|Homo sapiens cytochrome c oxidase as...    50   1e-06
AM081039-1|CAL05185.1|  101|Homo sapiens immunoglobulin heavy ch...    29   2.7  
AM080606-1|CAL04752.1|  100|Homo sapiens immunoglobulin heavy ch...    28   4.7  
AM081303-1|CAL05449.1|  100|Homo sapiens immunoglobulin heavy ch...    27   8.2  

>CR541837-1|CAG46636.1|  276|Homo sapiens COX11 protein.
          Length = 276

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/58 (37%), Positives = 35/58 (60%)
 Frame = +2

Query: 125 DQRSKIRSTLNYMVALGVLTVGLSCAAVPLYRIFCQAYSYGGTTGQAEANSSVSGMKP 298
           ++R + ++TL Y+ A+ V  +G S AAVPLYR++CQ    GG+     A+  +  M P
Sbjct: 87  ERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGHASDKIENMVP 144


>BC005895-1|AAH05895.1|  276|Homo sapiens COX11 homolog, cytochrome
           c oxidase assembly protein (yeast) protein.
          Length = 276

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/58 (37%), Positives = 35/58 (60%)
 Frame = +2

Query: 125 DQRSKIRSTLNYMVALGVLTVGLSCAAVPLYRIFCQAYSYGGTTGQAEANSSVSGMKP 298
           ++R + ++TL Y+ A+ V  +G S AAVPLYR++CQ    GG+     A+  +  M P
Sbjct: 87  ERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGHASDKIENMVP 144


>AF044321-1|AAD08645.1|  276|Homo sapiens cytochrome c oxidase
           assembly protein COX11 protein.
          Length = 276

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/58 (37%), Positives = 35/58 (60%)
 Frame = +2

Query: 125 DQRSKIRSTLNYMVALGVLTVGLSCAAVPLYRIFCQAYSYGGTTGQAEANSSVSGMKP 298
           ++R + ++TL Y+ A+ V  +G S AAVPLYR++CQ    GG+     A+  +  M P
Sbjct: 87  ERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGHASDKIENMVP 144


>AM081039-1|CAL05185.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 151 SQLYGGFGSPDSRIKLCCGATLQNILSGIQLWRYNRPSRG 270
           S+  GG G P   ++L C AT     S   +W    P +G
Sbjct: 8   SESGGGLGQPGGSLRLSCAATGFTFSSYAMIWVRQAPGKG 47


>AM080606-1|CAL04752.1|  100|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 100

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 163 GGFGSPDSRIKLCCGATLQNILSGIQLWRYNRPSRG 270
           GG G P   ++L C A+     + +  W    P RG
Sbjct: 12  GGLGQPGGSLRLSCAASGFTFSNSVMSWVRQAPGRG 47


>AM081303-1|CAL05449.1|  100|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 100

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 163 GGFGSPDSRIKLCCGATLQNILSGIQLWRYNRPSRG 270
           GG   P   ++L C AT     S +  W    P +G
Sbjct: 12  GGLVQPGGSLRLACAATRSTFSSYVMSWVRQAPGKG 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,261,534
Number of Sequences: 237096
Number of extensions: 671890
Number of successful extensions: 7379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7379
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)