Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N07
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical pr...    48   2e-06
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    28   1.4  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    27   1.9  
Z50859-8|CAN99723.1|  549|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z50859-7|CAH04735.1|  574|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z50859-4|CAA90730.1|  538|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z50859-3|CAA90728.1|  632|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    26   4.4  
AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical ...    26   4.4  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U51995-6|AAA96074.1|  430|Caenorhabditis elegans Hypothetical pr...    25   7.6  
AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical ...    25   7.6  

>Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical
           protein JC8.5 protein.
          Length = 260

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/57 (35%), Positives = 36/57 (63%)
 Frame = +2

Query: 125 DQRSKIRSTLNYMVALGVLTVGLSCAAVPLYRIFCQAYSYGGTTGQAEANSSVSGMK 295
           D+ +  R+   Y+++L ++ +G + AA+P YRIFC+  S+GG T  A+    ++ MK
Sbjct: 53  DKSADTRNYTYYVMSLVIVAIGCTFAAIPAYRIFCEQTSFGGLTQVAKDFDKIANMK 109


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
           protein Y39B6A.30 protein.
          Length = 1408

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 212 LYRIFCQAYSYGGTT-GQAEANSSV-SGMKP 298
           L  +FC+ YS+ GTT G A +N SV +  KP
Sbjct: 11  LLLMFCKLYSFNGTTLGPANSNVSVKASTKP 41


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 221 IFCQAYSYGGTT-GQAEANSSV-SGMKP 298
           +FC+ YS+ GTT G A +N SV +  KP
Sbjct: 1   MFCKLYSFNGTTLGPANSNVSVKASTKP 28


>Z50859-8|CAN99723.1|  549|Caenorhabditis elegans Hypothetical
           protein T26C5.3d protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 73  WFTYKDIIS*STK-VIFAC 20
           WFTYKD +   TK +++AC
Sbjct: 466 WFTYKDCVVKGTKEILYAC 484


>Z50859-7|CAH04735.1|  574|Caenorhabditis elegans Hypothetical
           protein T26C5.3c protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 73  WFTYKDIIS*STK-VIFAC 20
           WFTYKD +   TK +++AC
Sbjct: 491 WFTYKDCVVKGTKEILYAC 509


>Z50859-4|CAA90730.1|  538|Caenorhabditis elegans Hypothetical
           protein T26C5.3b protein.
          Length = 538

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 73  WFTYKDIIS*STK-VIFAC 20
           WFTYKD +   TK +++AC
Sbjct: 455 WFTYKDCVVKGTKEILYAC 473


>Z50859-3|CAA90728.1|  632|Caenorhabditis elegans Hypothetical
           protein T26C5.3a protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 73  WFTYKDIIS*STK-VIFAC 20
           WFTYKD +   TK +++AC
Sbjct: 549 WFTYKDCVVKGTKEILYAC 567


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
            protein B0222.9 protein.
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 139  NSIDSQLYGGFGSPDSRIKLCCGATLQNILSGIQLWR 249
            N+  +Q+Y   G  +  + + CGA   +I++ I  WR
Sbjct: 1154 NANGAQVYSSKGIGEPPLMMSCGAVHSSIMNCIDNWR 1190


>AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical
           protein Y43F11A.5 protein.
          Length = 868

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 238 VCLTKYSVKWHRSTT*SYCQDSQS-HHIVESRSNFTSLIV 122
           +C+T   +  +   T   CQ++ +  HI+ S+SNF  +IV
Sbjct: 104 ICITTSELGNYSEITRRSCQNNSTLRHILGSKSNFRVMIV 143


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 241 TVCLTKYSVKWHRSTT*SYCQDSQSHHIVESRSNFTS 131
           T C T YS +   +   + CQ S S+++  S S +++
Sbjct: 87  TYCTTSYSCRSGETCMNNRCQSSYSNNMYNSNSQYSN 123


>U51995-6|AAA96074.1|  430|Caenorhabditis elegans Hypothetical
           protein F07G6.3 protein.
          Length = 430

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 259 ACCTSITVCLTKYSVKWHRSTT*SYCQDSQSHHIV 155
           +C + + VC   Y  +W  S   S  QD +SHH++
Sbjct: 389 SCRSEVGVC---YGWRWDVSQVPSCSQDWRSHHVL 420


>AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.16 protein.
          Length = 240

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -2

Query: 265 CLACCTSITVCLTKYSVKWHRSTT*SYCQDSQ---SHHIVESRSNFTSLIV*ASVNNIIC 95
           C   C S+   + K+ + + +       + S+   ++H    R +  SLI        +C
Sbjct: 21  CRKVCQSLRTAVDKFGITFDKDLGIILSRVSKFNLTNHTKNKRDSMKSLIKALKTKKFVC 80

Query: 94  *FYRY*YWFTYKDIIS 47
               Y Y F + +I+S
Sbjct: 81  ATKIYFYQFRFNEILS 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,931,432
Number of Sequences: 27780
Number of extensions: 96933
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)