Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N06
(256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 2.1
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 24 2.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 3.7
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 23 4.9
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 23 6.4
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 23 6.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 23 8.5
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 23 8.5
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 8.5
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 23 8.5
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe... 23 8.5
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 2.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 250 SNGSQKRRMRTECRESLN 197
SNGS +RR RT+ E L+
Sbjct: 206 SNGSNRRRYRTQMEEPLS 223
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 24.2 bits (50), Expect = 2.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 80 VRVSSHRWLIYSYIQDNVNKNRDYTTKWHWLY 175
V + H ++Y + +NV + Y T+W +Y
Sbjct: 55 VSLMQHHMVLYVTVIENVREVTYYETQWKEIY 86
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 23.8 bits (49), Expect = 3.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 79 CACFEPSLANIFI 117
CACFEPSL + +
Sbjct: 806 CACFEPSLDYVVV 818
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 23.4 bits (48), Expect = 4.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 166 VPFCCVISIFVNIIL 122
+PF C ++IF NI L
Sbjct: 173 MPFACTVAIFWNIFL 187
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 23.0 bits (47), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 202 VILYTLSAFSSFDSHC 249
VI +TLS + D HC
Sbjct: 208 VIFFTLSTLKTVDDHC 223
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 23.0 bits (47), Expect = 6.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 51 KVYWFLFIQLCVF 89
K+YW F LC+F
Sbjct: 106 KLYWTAFFSLCLF 118
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 22.6 bits (46), Expect = 8.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 129 MLTKIEITQQNGTGYTFKKNLIILSDSLHSVRILLF 236
MLTK E G F + SLH+ RI L+
Sbjct: 3 MLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLW 38
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 22.6 bits (46), Expect = 8.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 114 HTYKIMLTKIEITQQNGTGY--TFKKNLIILSDSLHSVR 224
H Y I T T Y TF+K ++ + +HSVR
Sbjct: 211 HGYLISSTVSPATNDRNDKYGGTFEKRILFPMEVVHSVR 249
>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 190
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 132 LTKIEITQQNGTG--YTFKKNLIIL 200
L + ++ + GT +TFKKN++IL
Sbjct: 65 LVETDLFTEEGTSQIFTFKKNVLIL 89
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 86 VSSHRWLIYSYIQDNVN 136
V S WL+YSY D N
Sbjct: 671 VFSENWLVYSYQSDVPN 687
>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 342
Score = 22.6 bits (46), Expect = 8.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 198 IL*DFF*MYNQCHFVV*SRFLLTLSCMYEYISQRWLET 85
+L F+ N C F V S+ T + E ++Q++LET
Sbjct: 9 LLTKFYISANSCAFFVKSQRKWTSPDLSEDVAQKFLET 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 945,682
Number of Sequences: 5004
Number of extensions: 15548
Number of successful extensions: 43
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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