Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N06
         (256 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138     28   1.2  
05_02_0036 - 5879079-5879180,5879690-5879803,5880809-5880913           26   4.8  
10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096     25   6.4  
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39...    25   6.4  

>08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138
          Length = 275

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   SARGRELVSVXXXXXXKVYWFLFIQLCVFRAIAG 104
           SARG    +V      KV+W  F+ + VF   AG
Sbjct: 76  SARGEGSAAVAVAAATKVFWASFLAVGVFFPFAG 109


>05_02_0036 - 5879079-5879180,5879690-5879803,5880809-5880913
          Length = 106

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 253 FSNGSQKRRMRTECRESLNIIRFFL 179
           +S G Q++R R E R   NII F+L
Sbjct: 22  YSRGCQRKRKRKEERYMGNIISFYL 46


>10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096
          Length = 404

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 86  VSSHRWLIYSYIQDNVNKNRDY 151
           V  HRW IY Y   +   N DY
Sbjct: 53  VGGHRWRIYYYPNGDHTDNADY 74


>03_01_0047 +
           391689-392738,392832-392999,393091-393195,393529-393611,
           393899-394364
          Length = 623

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 81  CVFRAIAG*YIHTYKIMLTKIEITQQNGTGYTFKKNLIILSDSL 212
           CVF+       H Y I  T+  +  Q G     K+ + ++ D+L
Sbjct: 385 CVFKGDPANASHLYNIHTTEKRVAHQCGCSKAVKERISMIMDNL 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,613,443
Number of Sequences: 37544
Number of extensions: 81363
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)