Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N06
(256 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical ... 29 0.60
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 28 1.1
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 28 1.1
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 28 1.1
AC024753-6|AAF60458.2| 407|Caenorhabditis elegans Hypothetical ... 26 3.2
AF100306-3|AAC68923.2| 155|Caenorhabditis elegans Hypothetical ... 26 4.3
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 25 9.8
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 25 9.8
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 25 9.8
AC103567-2|AAL35733.1| 220|Caenorhabditis elegans Hypothetical ... 25 9.8
>AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical
protein Y105C5B.11 protein.
Length = 583
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 8 TRERTSLGXXXXXLKSVLVFIYSTVRVSSHRWLIYSYIQDNVNKNRDYTTK 160
+RE+ + L + + YS + VS + I++YI +VN +R+Y +K
Sbjct: 81 SREQMMMHPRDQYLHVLSPYCYSAIEVSHAVFSIFAYIVCDVNWSREYCSK 131
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 111 IHTYKIMLTKIEITQQNGTGYTFKKNL-IILSDSLHSVR 224
+ T KI+ I I QQN F KNL II LH+VR
Sbjct: 406 LETVKIVSEYITIVQQNFYDLKFLKNLQIIEGRKLHNVR 444
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 111 IHTYKIMLTKIEITQQNGTGYTFKKNL-IILSDSLHSVR 224
+ T KI+ I I QQN F KNL II LH+VR
Sbjct: 406 LETVKIVSEYITIVQQNFYDLKFLKNLQIIEGRKLHNVR 444
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 111 IHTYKIMLTKIEITQQNGTGYTFKKNL-IILSDSLHSVR 224
+ T KI+ I I QQN F KNL II LH+VR
Sbjct: 457 LETVKIVSEYITIVQQNFYDLKFLKNLQIIEGRKLHNVR 495
>AC024753-6|AAF60458.2| 407|Caenorhabditis elegans Hypothetical
protein Y23H5B.4 protein.
Length = 407
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 160 FCCVISIFVNIILYV*IY*PAMARN 86
F CVI +F NI + V + PAM ++
Sbjct: 39 FLCVIGVFANISIVVVLLRPAMRKS 63
>AF100306-3|AAC68923.2| 155|Caenorhabditis elegans Hypothetical
protein T24C4.4 protein.
Length = 155
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 56 VLVFIYSTVRVSSHRWLIYSYIQDNVNK 139
+L FI++ V V + WL++SY + V +
Sbjct: 12 LLGFIFNAVSVFTDSWLVWSYAKIQVTR 39
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 68 IYSTVRVSSHRWLIYSYIQDNVNKNRDYTTKW 163
I ST+ H W+ +Y+ ++V +RD T ++
Sbjct: 124 INSTIIPFHHLWIPDTYLYNSVKMSRDETERY 155
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 68 IYSTVRVSSHRWLIYSYIQDNVNKNRDYTTKW 163
I ST+ H W+ +Y+ ++V +RD T ++
Sbjct: 124 INSTIIPFHHLWIPDTYLYNSVKMSRDETERY 155
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 68 IYSTVRVSSHRWLIYSYIQDNVNKNRDYTTKW 163
I ST+ H W+ +Y+ ++V +RD T ++
Sbjct: 124 INSTIIPFHHLWIPDTYLYNSVKMSRDETERY 155
>AC103567-2|AAL35733.1| 220|Caenorhabditis elegans Hypothetical
protein Y51F10.6 protein.
Length = 220
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 165 CHFVV*SRFLLTLSC 121
CHFV+ RFL +SC
Sbjct: 146 CHFVISIRFLKEMSC 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,205,228
Number of Sequences: 27780
Number of extensions: 84898
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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