Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N05
(277 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 85 1e-18
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 0.37
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 1.5
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 23 6.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 23 6.1
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 23 6.1
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 23 6.1
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 23 6.1
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 23 8.0
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 23 8.0
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 23 8.0
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 85.4 bits (202), Expect = 1e-18
Identities = 39/76 (51%), Positives = 51/76 (67%)
Frame = +2
Query: 50 AGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDEIFGNLRDYYV 229
+GPP+ VI LG + + ++VC+ +PYFNAPIYLENK QIGKIDE+FG + Y
Sbjct: 24 SGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYF 83
Query: 230 SVKLGENIKAKSFKDG 277
+VK E I + SFK G
Sbjct: 84 TVKPSEGIVSSSFKVG 99
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.5 bits (58), Expect = 0.37
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 146 NKAHLQYPLCKLGRPEPSNHNGREE*HFLEDQHHIAVES 30
N A +Q+ LC+L R +P N E+ +F Q ++E+
Sbjct: 783 NVAFVQFQLCELIRQKPENSRTVEDLNFAMQQLDASIET 821
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 1.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 266 NFSLLYSLLASPIRSNPEDCQKFRQSFRFVPYFQDR*ER*NKAHLQYPLCKLGR 105
NF ++S+L+ ED KF++ RF+ F ++ ER K + +L R
Sbjct: 1072 NFIDIFSVLSRSAEEQDEDDAKFKRIIRFLTSFIEK-ERHTKQLAERLAARLDR 1124
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 23.4 bits (48), Expect = 6.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 67 CYSSRPLWLDGS 102
C + PLW+DGS
Sbjct: 318 CVTDAPLWMDGS 329
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 56 PPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNA 154
P E+++PL YG V+ C+V +E +F +
Sbjct: 1045 PDENILPLHFYGELVKSPQGCEV-LESSGHFES 1076
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 125 DIEDVPYFNAPIYLENKEQIGKIDEIFGNLRDY 223
D ED+ NAP+ + + +DE+ G+ DY
Sbjct: 1051 DKEDLGSSNAPLDVPHGANRSSMDEVNGSKYDY 1083
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 185 GKIDEIFGNLRDYYVSVK 238
GK +FGN+ + VSVK
Sbjct: 298 GKSGRVFGNMMGFMVSVK 315
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 254 LYSLLASPIRSNPEDCQ 204
L SLL +P SNP+D Q
Sbjct: 110 LQSLLCTPEPSNPQDAQ 126
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 221 NPEDCQKFRQSFRFVPYFQDR-*ER*NKAHLQYPLCKLGRPEPSN 90
+PE+ +++SF PYF + E K H + + +P N
Sbjct: 184 DPEEVDAWKKSFENSPYFSESYFETFGKMHHGWMAARANLSDPEN 228
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 41 QYDAG-PPESVIPLGHYGWTVQDDLVCKVDIED 136
QY+ PP++++P+G Y V + C + ED
Sbjct: 351 QYECNLPPQTIVPVGKYTGIV-GTIWCLLSEED 382
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 WQSSGLLRIGEARREYKSEKFQR 273
+QSS L I E RR +S FQ+
Sbjct: 236 YQSSATLSIDEQRRVLRSNYFQQ 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,033
Number of Sequences: 5004
Number of extensions: 22684
Number of successful extensions: 57
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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