Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N05
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374... 81 1e-16
09_02_0092 + 4173741-4175417 27 2.1
01_01_0630 + 4746121-4746351,4747288-4747665,4747767-4747910 27 2.1
10_06_0020 - 9693126-9693437,9694940-9695368 26 3.7
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 26 5.0
04_01_0154 - 1775693-1775942,1776834-1777588 26 5.0
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 26 5.0
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672... 25 6.5
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 25 6.5
02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326... 25 6.5
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 25 8.7
06_01_0422 + 3034556-3034777,3034859-3035138,3036398-3036483,303... 25 8.7
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 25 8.7
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 25 8.7
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100... 25 8.7
01_06_1172 - 35115248-35115874 25 8.7
>11_06_0188 +
21036465-21036627,21036735-21036883,21037369-21037484,
21037939-21038101
Length = 196
Score = 81.0 bits (191), Expect = 1e-16
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +2
Query: 47 DAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDEIFGNLRDYY 226
D GPP V+ + + + D V K+ E VPYFNAPIYL+NK QIGK+DEIFG + +
Sbjct: 46 DEGPPAEVVEVSTFMHACEGDAVTKLTNEKVPYFNAPIYLQNKTQIGKVDEIFGPINESL 105
Query: 227 VSVKLGENIKAKSFKDG 277
S+K+ E I A S+ +G
Sbjct: 106 FSIKMLEGIIATSYSEG 122
>09_02_0092 + 4173741-4175417
Length = 558
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 132 KMCLISTLLSILKIRNKSERL 194
K C++ST +LKI+ +SERL
Sbjct: 348 KYCILSTPRKLLKIKKESERL 368
>01_01_0630 + 4746121-4746351,4747288-4747665,4747767-4747910
Length = 250
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 117 AKWILKMCLISTLLSILKIRNKSERLTKFLAIFGITT 227
A+W+ K ++ T + LKIR + R+ LA F + T
Sbjct: 187 AEWVKKPLILETDCANLKIRRECNRVAHDLAKFAMRT 223
>10_06_0020 - 9693126-9693437,9694940-9695368
Length = 246
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 1 ARGSWRRWRRLSTAI*CWSSRKCYSSRPL 87
ARGSWRR RR + WSS++ S R L
Sbjct: 108 ARGSWRRRRRSCS---WWSSQQWCSRRHL 133
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 71 IPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQI 184
+ + Y ++ DD VCK E + F+ I L NKE++
Sbjct: 240 VKVPEYCPSLDDDGVCKTAFELIFAFDEAISLGNKEKV 277
>04_01_0154 - 1775693-1775942,1776834-1777588
Length = 334
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 1 ARGSWRRWRRLSTAI*CW 54
ARGSWRR RRL+T W
Sbjct: 182 ARGSWRR-RRLATGASSW 198
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 38 QQYDAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDEI 202
Q+ G P + PLG T + ++ + Y + +E KE K+DEI
Sbjct: 20 QRSGGGAPAASAPLGKGKGTTLRVAELEQELHEYQYNMGLLLIEKKEWTAKLDEI 74
>12_01_0748 -
6728221-6728305,6728788-6728842,6729202-6729289,
6729681-6729818,6729978-6730142,6730235-6730354,
6730555-6730631,6730738-6731113,6731523-6732617
Length = 732
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 35 RQQYDAGPPESVIPLG 82
+Q Y++ PP S++PLG
Sbjct: 408 KQNYESPPPVSILPLG 423
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 275 RL*NFSLLYSLLASPIRSNPEDCQKFR 195
R+ + L Y + SPI + P+D ++F+
Sbjct: 949 RINEYELKYIIKTSPIEATPKDIEEFK 975
>02_01_0455 +
3266123-3266258,3266348-3266670,3267083-3267661,
3267866-3268336
Length = 502
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 6 RVVAAVEAAFDSNMMLVLQKVLFLSAIMVGRF 101
RV+ FDS ++ + LFLSA++ G F
Sbjct: 69 RVITNQYCKFDSQVLTLFGSSLFLSAMVAGIF 100
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 99 FRTT*FAKWILKMCLISTLL 158
F TT WILK+C +ST++
Sbjct: 196 FSTTESFLWILKICSLSTIM 215
>06_01_0422 +
3034556-3034777,3034859-3035138,3036398-3036483,
3036614-3036837,3036911-3036971,3037634-3037828,
3037981-3038205
Length = 430
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 95 TVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDEI 202
T+Q D+V V+++ NA + L+ EQIG+I+ +
Sbjct: 305 TMQRDVVT-VELKSAKERNANLELQLSEQIGRIERL 339
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 56 PPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIY--LENKEQIGKIDEIFGNLRDYYV 229
P +P+G + + ++ + ++ P I E++ +G +DE+FG +++ Y
Sbjct: 263 PHHQTLPVGTISAIMGERVIVEGSVQHNPLNEGSILWITESRIPLGIVDELFGPVKNPYY 322
Query: 230 SVK 238
V+
Sbjct: 323 LVR 325
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 99 FRTT*FAKWILKMCLISTLL 158
F TT WILK+C +ST++
Sbjct: 196 FSTTESFLWILKICSLSTIM 215
>03_04_0201 -
18409088-18409306,18409389-18409475,18409950-18410072,
18410175-18410534,18410610-18410694,18410780-18410838,
18411350-18411442,18411537-18411641,18411716-18411813,
18411988-18412093,18412186-18412308,18413163-18413198,
18413290-18413487,18413592-18413789,18414094-18414233,
18414356-18414497,18414591-18414731
Length = 770
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 99 FRTT*FAKWILKMCLISTLL 158
F TT WILK+C +ST++
Sbjct: 196 FSTTESFLWILKICSLSTIM 215
>01_06_1172 - 35115248-35115874
Length = 208
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 24 EAAFDSNMMLVLQKVLFLSAIMVG 95
+A+FD+NM+++L +LF +G
Sbjct: 39 DASFDTNMVIILAALLFALLFALG 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,423,070
Number of Sequences: 37544
Number of extensions: 144269
Number of successful extensions: 436
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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