Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N05
         (277 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein famil...   111   3e-25
AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein famil...   111   3e-25
AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.        111   3e-25
BC130381-1|AAI30382.1|  538|Homo sapiens zinc finger protein 155...    27   8.0  
BC126377-1|AAI26378.1|  538|Homo sapiens zinc finger protein 155...    27   8.0  
BC075051-1|AAH75051.1|  538|Homo sapiens zinc finger protein 155...    27   8.0  
BC075050-1|AAH75050.1|  538|Homo sapiens zinc finger protein 155...    27   8.0  
AC018725-1|AAF18684.1|  538|Homo sapiens ZNF155 protein.               27   8.0  

>BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein family
           A, member 1 (H/ACA small nucleolar RNPs) protein.
          Length = 217

 Score =  111 bits (268), Expect = 3e-25
 Identities = 52/82 (63%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
 Frame = +2

Query: 32  FRQQYDAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFNAPIYLENKEQIGKIDEIF 205
           F +  D GPPE V+ LG +    +DD+VCK   D   VPYFNAP+YLENKEQIGK+DEIF
Sbjct: 58  FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIF 117

Query: 206 GNLRDYYVSVKLGENIKAKSFK 271
           G LRD+Y SVKL EN+KA SFK
Sbjct: 118 GQLRDFYFSVKLSENMKASSFK 139


>AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein family A
           member 1 protein.
          Length = 199

 Score =  111 bits (268), Expect = 3e-25
 Identities = 52/82 (63%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
 Frame = +2

Query: 32  FRQQYDAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFNAPIYLENKEQIGKIDEIF 205
           F +  D GPPE V+ LG +    +DD+VCK   D   VPYFNAP+YLENKEQIGK+DEIF
Sbjct: 58  FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIF 117

Query: 206 GNLRDYYVSVKLGENIKAKSFK 271
           G LRD+Y SVKL EN+KA SFK
Sbjct: 118 GQLRDFYFSVKLSENMKASSFK 139


>AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.
          Length = 217

 Score =  111 bits (268), Expect = 3e-25
 Identities = 52/82 (63%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
 Frame = +2

Query: 32  FRQQYDAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFNAPIYLENKEQIGKIDEIF 205
           F +  D GPPE V+ LG +    +DD+VCK   D   VPYFNAP+YLENKEQIGK+DEIF
Sbjct: 58  FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIF 117

Query: 206 GNLRDYYVSVKLGENIKAKSFK 271
           G LRD+Y SVKL EN+KA SFK
Sbjct: 118 GQLRDFYFSVKLSENMKASSFK 139


>BC130381-1|AAI30382.1|  538|Homo sapiens zinc finger protein 155
           protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 62  ESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDE 199
           E+ +P  H G        CK    DVP F+ P  L ++E+    DE
Sbjct: 135 EAGLPTIHTGQKPSQGGKCKQSFSDVPIFDLPQQLYSEEKSYTCDE 180


>BC126377-1|AAI26378.1|  538|Homo sapiens zinc finger protein 155
           protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 62  ESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDE 199
           E+ +P  H G        CK    DVP F+ P  L ++E+    DE
Sbjct: 135 EAGLPTIHTGQKPSQGGKCKQSFSDVPIFDLPQQLYSEEKSYTCDE 180


>BC075051-1|AAH75051.1|  538|Homo sapiens zinc finger protein 155
           protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 62  ESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDE 199
           E+ +P  H G        CK    DVP F+ P  L ++E+    DE
Sbjct: 135 EAGLPTIHTGQKPSQGGKCKQSFSDVPIFDLPQQLYSEEKSYTCDE 180


>BC075050-1|AAH75050.1|  538|Homo sapiens zinc finger protein 155
           protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 62  ESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDE 199
           E+ +P  H G        CK    DVP F+ P  L ++E+    DE
Sbjct: 135 EAGLPTIHTGQKPSQGGKCKQSFSDVPIFDLPQQLYSEEKSYTCDE 180


>AC018725-1|AAF18684.1|  538|Homo sapiens ZNF155 protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 62  ESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDE 199
           E+ +P  H G        CK    DVP F+ P  L ++E+    DE
Sbjct: 135 EAGLPTIHTGQKPSQGGKCKQSFSDVPIFDLPQQLYSEEKSYTCDE 180


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,792,506
Number of Sequences: 237096
Number of extensions: 721583
Number of successful extensions: 1345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)