Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N05
         (277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   1.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   6.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   8.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   8.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 227 RSNPEDCQKFRQSFR 183
           R+N ED ++FRQ  R
Sbjct: 481 RNNKEDSEEFRQRLR 495


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 135  SSISTLQTRSS*TVQP*WPRGITLSG 58
            S ++TL+  +  TVQ     G+TL G
Sbjct: 946  SGVTTLEAAARVTVQELTALGVTLVG 971


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +2

Query: 92  WTVQDDLVCKVDIEDVPY 145
           WT  +D++C   I ++ +
Sbjct: 213 WTQDEDIICSTPIGNLSH 230


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +2

Query: 92  WTVQDDLVCKVDIEDVPY 145
           WT  +D++C   I ++ +
Sbjct: 160 WTQDEDVICSTPIGNLSH 177


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 254 LYSLLASPIRSNP 216
           +Y+++ASP  +NP
Sbjct: 19  IYNIIASPQLNNP 31


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 171 IRNKSERLTKFLAIFGI 221
           +RN    LTK  A FGI
Sbjct: 423 LRNHDMSLTKASATFGI 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,361
Number of Sequences: 438
Number of extensions: 1397
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)