Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N04
         (244 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   5.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    23   5.6  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    23   5.6  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   7.5  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    23   7.5  
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    22   9.9  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    22   9.9  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    22   9.9  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    22   9.9  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -2

Query: 177  EYNVASNKCL*HILLIEFYLSYXHIYNCTCPIQMLYINR 61
            ++N + +K + H+L    ++S  H++     + + YI R
Sbjct: 1090 DFNNSGSKLM-HVLHARIFISVLHLWRSADDLHLPYITR 1127


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 152  HLFDATLYSNRRRPGQTDLIC 214
            +L DA  + N+R P +  L+C
Sbjct: 944  YLVDAEGFMNKRNPDENKLLC 964


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 159 NKCL*HILLIEFYLSYXHIYNC 94
           ++C+ H++   +YL   H++ C
Sbjct: 237 SQCIPHLVQKSYYLQNRHVFPC 258


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 20  YLCNFFH 40
           YLCNFFH
Sbjct: 355 YLCNFFH 361


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 159 SMQHCTQIEDDRAKRTSYADSECQN 233
           S     ++   RAK  SYA + CQN
Sbjct: 105 SFSSALKLVQARAKAMSYASALCQN 129


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 81  ELGKCSYKYXXMINKI 128
           ELGK S+KY  +++K+
Sbjct: 48  ELGKGSFKYAWVLDKL 63


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 81  ELGKCSYKYXXMINKI 128
           ELGK S+KY  +++K+
Sbjct: 48  ELGKGSFKYAWVLDKL 63


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 81  ELGKCSYKYXXMINKI 128
           ELGK S+KY  +++K+
Sbjct: 48  ELGKGSFKYAWVLDKL 63


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 107 IFITALAQFKCCILIGQINFKF 42
           I+ITA     CC+++ + NF +
Sbjct: 87  IYITADQSALCCVVLDKQNFVY 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 969,723
Number of Sequences: 5004
Number of extensions: 15754
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)